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[173575_s_at]

Description CEC4013_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F19H6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10401 /WB_GENE_ID=F19H6.5 /WP=CE03236 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk145f12 : 3prime end, single read.
Cluster 6grp_total > 35      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 3.3
(-2.9)
A 		45.8
(0.1)
A 		1.7
(-3)
A 		87.7
(3)
P 		86
B 46.6
(3)
A 		2.9
(-3)
A 		19.7
(-0.7)
A 		14.5
(-1.4)
A 		44
C 32
(-1)
A 		30.2
(-1.2)
A 		13.9
(-3)
A 		67.9
(3)
A 		54
avr 27.3
(-0.9) 		26.3
(-1.1) 		11.8
(-3) 		56.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 75
(3)
M 		20.6
(-1.6)
A 		42.8
(0.3)
P 		4.3
(-3)
A 		6.5
(-2.8)
A 		38
(-0.1)
A 		71
B 30.5
(3)
A 		19.1
(0.4)
A 		21
(0.8)
A 		8.7
(-2)
A 		6.7
(-2.4)
A 		4.1
(-3)
A 		26
C 30.5
(-0.4)
A 		67.8
(3)
A 		18.6
(-1.5)
A 		2.1
(-3)
A 		2.2
(-3)
A 		3.7
(-2.9)
A 		66
avr 45.3
(3) 		35.8
(1.6) 		27.5
(0.3) 		5
(-3) 		5.1
(-3) 		15.3
(-1.5) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.2
(-2.6)
A 		9.9
(1.6)
A 		0.4
(-3)
A 		12.8
(3)
P 		12
B 14.8
(3)
A 		0.7
(-3)
A 		4.6
(-1.3)
A 		3.1
(-2)
A 		14
C 10.6
(2.2)
A 		8.7
(0.5)
A 		4.8
(-3)
A 		11.5
(3)
A 		7
avr 8.9
(2.8) 		6.4
(0.2) 		3.3
(-3) 		9.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.8
(3)
M 		7.3
(-0.1)
A 		9.3
(0.9)
P 		1.1
(-3)
A 		2
(-2.6)
A 		9.2
(0.8)
A 		13
B 10.6
(3)
A 		6.4
(0.2)
A 		5.1
(-0.6)
A 		2.3
(-2.5)
A 		2.7
(-2.2)
A 		1.5
(-3)
A 		9
C 11.3
(0.2)
A 		20.7
(3)
A 		4.7
(-1.7)
A 		0.4
(-3)
A 		0.7
(-2.9)
A 		1.2
(-2.8)
A 		20
avr 11.9
(3) 		11.5
(2.8) 		6.4
(-0.1) 		1.3
(-3) 		1.8
(-2.7) 		4
(-1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173575_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25780
Sequence Type Exemplar sequence
Representative Public ID CEC4013 NCBI
Target Description CEC4013_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F19H6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C10401 /WB_GENE_ID=F19H6.5 /WP=CE03236 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk145f12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077675(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077675 NCBI Caenorhabditis elegans F19H6.5 (F19H6.5) mRNA, complete cds. 11/11 None
SNAP00000003012 ENSEMBL cdna:SNAP chromosome:CEL140:X:12363636:12364528:-1 9/11 None
GENEFINDER00000003017 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12363636:12364678:-1 11/11 None
F19H6.5 ENSEMBL cdna:known chromosome:CEL140:X:12363634:12364825:-1 gene:F19H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12363605-12364679(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19H6.5
Entrez Gene 181397 Entrez gene
SwissProt Q19602 EMBL-EBI
WormBase CE35497 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92165 Hypothetical protein F19H6.5 [Caenorhabditis elegans] ref|NP_510076.2| F19H6.5 [Caenorhabditis elegans] 1.0E-114
blast CAA92165 Hypothetical protein F19H6.5 [Caenorhabditis elegans] ref|NP_510076.2| F19H6.5 [Caenorhabditis elegans] 1.0E-110
blast CAA92165 Hypothetical protein F19H6.5 [Caenorhabditis elegans] ref|NP_510076.2| F19H6.5 [Caenorhabditis elegans] 2.0E-92
blast CAE57259 Hypothetical protein CBG00140 [Caenorhabditis briggsae] 4.0E-31
blast CAE57259 Hypothetical protein CBG00140 [Caenorhabditis briggsae] 4.0E-27
blast CAE57259 Hypothetical protein CBG00140 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:173575_S_AT
gagctctttcaaaccttaccagaagcctccatttttcaccgcagaatttccagtcaaaca
aaagtcagagattggtatagaaagtaaaacatcaaaaatcaactatatggagagaacact
agaaaatggaaatgttgtgaagattcaagtcgttaatgaaaatgcggtacgaacttgaaa
agttacccggctcccgaagaagaaactgccattgaaacggatcctgaaaatactcaacac
gtcatttgccgcccctcgccaattttaccgtgcttcaaaaactttactcctttcacactg
gcatcattcctgcaaccaggactggaagaaattttgcagtaccaagcagaaaaacggtct
ggttgtatcaaatcaactcatagccctacatcggaagaaatgtatattgcggccgttaaa
gataatccatatcctcaaatcaagtctaaaaagcaaaaagctcttcgtggcagatttcca
agggcgtcgcaaaaatctgtgcttgagcaaattatggtggacgcggagaaaaatgcaagc
gagcgggaagaaatggtcagagcaagtacagtcatccgataccgacatagttcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCTTTCAAACCTTACCAGAAG 14 389 16 Antisense
TTTTCACCGCAGAATTTCCAGTCAA 49 675 48 Antisense
AAACTGCCATTGAAACGGATCCTGA 582 127 218 Antisense
AAATACTCAACACGTCATTTGCCGC 367 115 243 Antisense
TCGCCAATTTTACCGTGCTTCAAAA 585 597 271 Antisense
CAAAAACTTTACTCCTTTCACACTG 457 191 291 Antisense
TTCACACTGGCATCATTCCTGCAAC 357 685 307 Antisense
TCAACTCATAGCCCTACATCGGAAG 669 629 388 Antisense
CGTGGCAGATTTCCAAGGGCGTCGC 679 243 481 Antisense
GGTCAGAGCAAGTACAGTCATCCGA 9 505 570 Antisense
TCATCCGATACCGACATAGTTCAAC 366 621 587 Antisense
Sequence Source Affymetrix Proprietary Database