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[173574_at]

Description CEK040F6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T10F2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34081 /WB_GENE_ID=T10F2.3 /WP=CE26951 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40f6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 48      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 91      6grp_total > 48      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 17      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 204.7
(3)
P 		128.3
(-3)
P 		182.8
(1.3)
P 		157.2
(-0.7)
P 		76
B 266.3
(3)
P 		78.3
(-3)
P 		109.2
(-2)
P 		146.8
(-0.8)
P 		188
C 258.6
(3)
P 		150.2
(-3)
P 		162.2
(-2.3)
P 		152.7
(-2.9)
P 		108
avr 243.2
(3) 		118.9
(-3) 		151.4
(-1.4) 		152.2
(-1.4) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 281.6
(1.4)
P 		234.3
(-0.6)
P 		186
(-2.7)
P 		179.3
(-3)
P 		199.6
(-2.1)
P 		318.6
(3)
P 		139
B 323.2
(3)
P 		246.8
(0)
P 		170.1
(-3)
P 		206.5
(-1.6)
P 		191.4
(-2.2)
P 		309.5
(2.5)
P 		153
C 307
(2.2)
P 		241.5
(-0.2)
P 		163.7
(-3)
P 		261.4
(0.6)
P 		239
(-0.3)
P 		328.6
(3)
P 		165
avr 303.9
(2.4) 		240.9
(-0.2) 		173.3
(-3) 		215.7
(-1.3) 		210
(-1.5) 		318.9
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 74.5
(3)
P 		27.9
(-2.4)
P 		47.8
(-0.1)
P 		23
(-3)
P 		52
B 84.9
(3)
P 		19.3
(-3)
P 		25.3
(-2.5)
P 		31.3
(-1.9)
P 		66
C 85.6
(3)
P 		43.2
(-1.2)
P 		56.5
(0.1)
P 		25.7
(-3)
P 		60
avr 81.7
(3) 		30.1
(-2.6) 		43.2
(-1.2) 		26.7
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 51.9
(-1.4)
P 		83.3
(3)
P 		40.5
(-3)
P 		45.5
(-2.3)
P 		60.2
(-0.2)
P 		77.6
(2.2)
P 		43
B 112.5
(2.8)
P 		82.2
(0.3)
P 		41.3
(-3)
P 		54.7
(-1.9)
P 		77.8
(-0)
P 		115.4
(3)
P 		74
C 113.8
(3)
P 		73.7
(-0.3)
P 		41.7
(-3)
P 		52.6
(-2.1)
P 		77.3
(-0)
P 		110
(2.7)
P 		72
avr 92.7
(2.2) 		79.7
(0.9) 		41.2
(-3) 		50.9
(-2) 		71.8
(0.1) 		101
(3) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24127
Sequence Type Exemplar sequence
Representative Public ID CEK040F6R NCBI
Target Description CEK040F6R_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T10F2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D34081 /WB_GENE_ID=T10F2.3 /WP=CE26951 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40f6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065694(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065694 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-1) (ulp-1) mRNA, complete cds. 11/11 None
T10F2.3 ENSEMBL cdna:known chromosome:CEL140:III:5165625:5169756:-1 gene:T10F2.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5165634-5169696(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-1
Ensembl T10F2.3
Entrez Gene 175704 Entrez gene
SwissProt Q09353 EMBL-EBI
WormBase CE33694 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:245521_AT Ulp1 protease family protein at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498095 Ubiquitin-Like Protease family member (ulp-1) [Caenorhabditis elegans] gb|AAK21468.3| Ubiquitin-like protease protein 1 [Caenorhabditis elegans] dbj|BAC22612.1| similar to SUMO-1-specific protease [Caenorhabditis elegans] sp|Q09353|SENT_CAEEL Probable sentrin-specific protease 0.0
blast T16845 hypothetical protein T10F2.3 - Caenorhabditis elegans 0.0
blast CAE73778 Hypothetical protein CBG21323 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 3.2E-52
Sequence
Target Sequence 
>C. ELEGANS:173574_AT
gattctcatcactaattataacttttgatttcatttcataccgtgtaaagaatgttcata
caaaagattaaagatgatcgacggtgtcagatcacatcacattatcacttgtcacgtggt
cattctcagatgacgttgttttgtttcaaaaggtgatgcaaactttcccatcccgttttt
aagatttttttgtctctgtggatctctggccttttttctcttttctctttttcattcttc
cttttatccgagttttatttgatttttgacgtatttattaacaattttctctcccttcca
cctttcaattcccagttcaataatatcaatcagctttctctgttatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCTCATCACTAATTATAACTTT 617 431 1988 Antisense
TTGATTTCATTTCATACCGTGTAAA 615 705 2012 Antisense
GATCGACGGTGTCAGATCACATCAC 468 417 2063 Antisense
ATCACATCACATTATCACTTGTCAC 557 27 2078 Antisense
ACTTGTCACGTGGTCATTCTCAGAT 103 105 2094 Antisense
TTCTCAGATGACGTTGTTTTGTTTC 469 691 2110 Antisense
AAGGTGATGCAAACTTTCCCATCCC 665 159 2137 Antisense
TCCTTTTATCCGAGTTTTATTTGAT 76 589 2226 Antisense
TATTTATTAACAATTTTCTCTCCCT 679 661 2259 Antisense
ATTCCCAGTTCAATAATATCAATCA 442 9 2295 Antisense
ATCAATCAGCTTTCTCTGTTATATC 233 27 2312 Antisense
Sequence Source Affymetrix Proprietary Database