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[173573_s_at]

Description CEC2086 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y75B7B.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C13208 /WB_GENE_ID=Y75B7B.2 /WP=CE24666 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165f5 : 5prime end, single read.
Cluster 6grp_total > 01      4grp_total > 11      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 8.4
(-0.9)
A 		9.4
(-0.3)
A 		4.6
(-3)
A 		15.4
(3)
A 		11
B 9.6
(-0.7)
A 		17
(3)
A 		9.6
(-0.7)
A 		4.9
(-3)
A 		12
C 7.4
(-2.6)
A 		4.5
(-3)
A 		5.3
(-2.9)
A 		44.3
(3)
A 		40
avr 8.5
(-2.2) 		10.3
(-1.5) 		6.5
(-3) 		21.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.6
(2.2)
A 		2.8
(-3)
A 		4.3
(-1)
A 		7.2
(3)
A 		4.7
(-0.4)
A 		4.7
(-0.4)
A 		4
B 8.1
(-0.3)
A 		6.5
(-1.1)
A 		2.7
(-3)
A 		9.7
(0.5)
A 		14.6
(3)
A 		5.3
(-1.7)
A 		12
C 3.9
(-2.6)
A 		21.1
(3)
A 		5.8
(-2)
A 		2.7
(-3)
A 		8.7
(-1)
A 		3.1
(-2.9)
A 		18
avr 6.2
(-1) 		10.1
(3) 		4.3
(-3) 		6.5
(-0.7) 		9.3
(2.2) 		4.4
(-2.9) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 3.1
(3)
A 		2
(-0.5)
A 		1.2
(-3)
A 		2.3
(0.5)
A 		2
B 3.1
(0.9)
A 		4.2
(3)
A 		2.2
(-0.9)
A 		1.1
(-3)
A 		3
C 2.4
(-1.9)
A 		1.3
(-3)
A 		1.9
(-2.4)
A 		7.5
(3)
A 		6
avr 2.9
(0.7) 		2.5
(-0.7) 		1.8
(-3) 		3.6
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.2
(-1)
A 		1
(-2.3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1.4
(0.3)
A 		1.1
(-1.7)
A 		1
B 2.8
(-0.6)
A 		2.2
(-1.3)
A 		0.7
(-3)
A 		2.6
(-0.8)
A 		5.9
(3)
A 		2
(-1.5)
A 		5
C 1.4
(-2.1)
A 		6.4
(3)
A 		1.5
(-2)
A 		0.5
(-3)
A 		2.8
(-0.7)
A 		1
(-2.5)
A 		6
avr 1.8
(-1) 		3.2
(2.5) 		1
(-3) 		1.6
(-1.5) 		3.4
(3) 		1.4
(-2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173573_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25683
Sequence Type Exemplar sequence
Representative Public ID CEC2086 NCBI
Target Description CEC2086 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y75B7B.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C13208 /WB_GENE_ID=Y75B7B.2 /WP=CE24666 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165f5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070999 NCBI Caenorhabditis elegans Y75B7B.2 (Y75B7B.2) mRNA, complete cds. 11/11 None
SNAP00000044338 ENSEMBL cdna:SNAP chromosome:CEL140:V:1274231:1275638:-1 10/11 None
Y75B7B.2 ENSEMBL cdna:known chromosome:CEL140:V:1274040:1275835:-1 gene:Y75B7B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1274050-1275639(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7B.2
Entrez Gene 178622 Entrez gene
SwissProt Q9N4D2 EMBL-EBI
WormBase CE24666 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36055 Hypothetical protein Y75B7B.2 [Caenorhabditis elegans] ref|NP_503400.1| Y75B7B.2 [Caenorhabditis elegans] 1.0E-114
blast AAF36055 Hypothetical protein Y75B7B.2 [Caenorhabditis elegans] ref|NP_503400.1| Y75B7B.2 [Caenorhabditis elegans] 1.0E-112
blast AAO12392 Poly(adp-ribose) metabolism enzyme protein 5, isoform b [Caenorhabditis elegans] ref|NP_001024306.1| Poly(ADP-ribose) Metabolism Enzyme family member (pme-5) [Caenorhabditis elegans] gb|AAN40683.1| poly ADP-ribose metabolism enzyme-5 [Caenorhabditis elegans] 5.0E-86
blast AAC04454 Poly(adp-ribose) metabolism enzyme protein 5, isoform a [Caenorhabditis elegans] ref|NP_503401.3| Poly(ADP-ribose) Metabolism Enzyme family member (pme-5) [Caenorhabditis elegans] sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 (Poly ADP-ribose metabolism enzyme 5) 5.0E-86
blast AAO12392 Poly(adp-ribose) metabolism enzyme protein 5, isoform b [Caenorhabditis elegans] ref|NP_001024306.1| Poly(ADP-ribose) Metabolism Enzyme family member (pme-5) [Caenorhabditis elegans] gb|AAN40683.1| poly ADP-ribose metabolism enzyme-5 [Caenorhabditis elegans] 1.0E-84
blast AAC04454 Poly(adp-ribose) metabolism enzyme protein 5, isoform a [Caenorhabditis elegans] ref|NP_503401.3| Poly(ADP-ribose) Metabolism Enzyme family member (pme-5) [Caenorhabditis elegans] sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 (Poly ADP-ribose metabolism enzyme 5) 1.0E-84
Sequence
Target Sequence 
>C. ELEGANS:173573_S_AT
aattgtgtcaactctgcaagattccagatggagcaatttccgagagtcagctggaattcc
acttggtgactgccgtccgaatgggccaccgtgagctggcatctgctttggcacaaggac
ccgtgagaatgcactgcaacgatcttcaccgagcaacgctgaatgatgagaagctggctg
ccagaattctttcggtgtctgttgccaaaaaggcgtatatgaataaaaatatcactcctc
ttcaaacggccgccatttccaactcgatccatatgcttgaagcggtgagagccgtctacc
caacgatcaacattcccgatcaagacaactggtatacgatgcactatgccgcgtgtgctc
ccggaactgcccccatggaatttctactcaaaaacggtggatctgttacaatgctcacca
agcagtctgaaacgccgttgcatgtggctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGTGTCAACTCTGCAAGATTCC 297 179 174 Antisense
TGGAATTCCACTTGGTGACTGCCGT 491 545 225 Antisense
GGCATCTGCTTTGGCACAAGGACCC 184 537 271 Antisense
GACCCGTGAGAATGCACTGCAACGA 75 383 291 Antisense
AGCTGGCTGCCAGAATTCTTTCGGT 658 81 345 Antisense
TTCTTTCGGTGTCTGTTGCCAAAAA 472 687 360 Antisense
AAAATATCACTCCTCTTCAAACGGC 191 133 399 Antisense
ATTTCCAACTCGATCCATATGCTTG 386 17 428 Antisense
TGCCCCCATGGAATTTCTACTCAAA 214 583 541 Antisense
GCTCACCAAGCAGTCTGAAACGCCG 229 301 586 Antisense
TGAAACGCCGTTGCATGTGGCTGCC 282 573 601 Antisense
Sequence Source Affymetrix Proprietary Database