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[173572_s_at]

Description CEC9441 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08944 /WB_GENE_ID=T05H10.3 /WP=CE01640 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142d6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      6grp_highest_nonorm > 49      6grp_total > 93      4grp_total > 10      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 58.2
(-3)
A 		79.2
(-2.3)
A 		80.4
(-2.3)
A 		240.3
(3)
P 		182
B 55.2
(-2.7)
A 		85.7
(-1.8)
M 		42.9
(-3)
A 		263.4
(3)
P 		221
C 56.2
(-3)
A 		121.1
(-1.1)
P 		56.6
(-3)
A 		256.3
(3)
P 		200
avr 56.5
(-3) 		95.3
(-1.8) 		60
(-2.9) 		253.3
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11737
1 2 3 4 5 6 range
A 803.5
(-2.8)
P 		356
(-3)
P 		352.3
(-3)
P 		10822.2
(2.7)
P 		11419.3
(3)
P 		3521.5
(-1.3)
P 		11067
B 748.6
(-2.8)
P 		497.1
(-2.9)
P 		303.9
(-3)
P 		9513
(2.1)
P 		11130.9
(3)
P 		3376.2
(-1.3)
P 		10827
C 737.7
(-2.8)
P 		531.7
(-2.9)
P 		277.3
(-3)
P 		9881.4
(1.9)
P 		12014.4
(3)
P 		3454.8
(-1.4)
P 		11737
avr 763.3
(-2.8) 		461.6
(-2.9) 		311.2
(-3) 		10072.2
(2.2) 		11521.5
(3) 		3450.8
(-1.3) 		11210
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 46
1 2 3 4 range
A 21.2
(-1.7)
A 		17.2
(-3)
A 		21
(-1.7)
A 		35.2
(3)
P 		18
B 17.6
(-2)
A 		21.2
(-1.5)
M 		10
(-3)
A 		56.1
(3)
P 		46
C 18.6
(-3)
A 		34.8
(1)
P 		19.7
(-2.7)
A 		43.2
(3)
P 		25
avr 19.1
(-2.5) 		24.4
(-1.4) 		16.9
(-3) 		44.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4452
1 2 3 4 5 6 range
A 148.1
(-2.9)
P 		126.6
(-2.9)
P 		76.7
(-3)
P 		2744.8
(1.8)
P 		3445.8
(3)
P 		857.4
(-1.6)
P 		3369
B 260.5
(-2.7)
P 		165.5
(-2.9)
P 		73.8
(-3)
P 		2519.7
(0.3)
P 		4522.3
(3)
P 		1259
(-1.4)
P 		4449
C 273.4
(-2.7)
P 		162.2
(-2.9)
P 		70.6
(-3)
P 		1987.2
(0)
P 		3887.7
(3)
P 		1156.5
(-1.3)
P 		3817
avr 227.3
(-2.8) 		151.4
(-2.9) 		73.7
(-3) 		2417.2
(0.6) 		3951.9
(3) 		1091
(-1.4) 		3878
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173572_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23181
Sequence Type Exemplar sequence
Representative Public ID CEC9441 NCBI
Target Description CEC9441 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05H10.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08944 /WB_GENE_ID=T05H10.3 /WP=CE01640 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142d6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063287 NCBI Caenorhabditis elegans T05H10.3 (T05H10.3) mRNA, complete cds. 11/11 None
SNAP00000019963 ENSEMBL cdna:SNAP chromosome:CEL140:II:8049071:8050439:-1 11/11 None
GENEFINDER00000019974 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8049071:8050439:-1 11/11 None
T05H10.3 ENSEMBL cdna:known chromosome:CEL140:II:8049003:8050454:-1 gene:T05H10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8049010-8050437(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05H10.3
Entrez Gene 174292 Entrez gene
SwissProt Q09347 EMBL-EBI
WormBase CE01640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87790 Hypothetical protein T05H10.3 [Caenorhabditis elegans] ref|NP_495688.1| T05H10.3 [Caenorhabditis elegans] sp|Q09347|YRS3_CAEEL Hypothetical protein T05H10.3 in chromosome II precursor 1.0E-92
blast CAE67837 Hypothetical protein CBG13422 [Caenorhabditis briggsae] 1.0E-92
blast CAE64829 Hypothetical protein CBG09625 [Caenorhabditis briggsae] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:173572_S_AT
gttcaggcctatactaattcttacaatcctttcatgtgtattggcttatcacgagtaccg
tgagcttaaatgctccactccaacaaactctatccgtggaggaccagatcgtgctgaatg
tcatttggttttgaaggctgaagagttggaaactggaagacctgttccaactggacttgg
atgctggcaggaagaccatgatggagaggagcgtgaatattgtgacattgtctgtccaaa
atcccacaccgtcttcatctcttacatcgatcaaggacatcgtgcgtgcttcaactttat
cacttatcaagttgagaaacgaaacgacgagcatgttctctggcgttctggaaagtgctt
gaactctactgtcaattaccgtatcggatgcaagttcgacgatccattcgagacccaatt
caagtccgacaacgagatcttcgctcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGGCCTATACTAATTCTTACA 219 445 16 Antisense
GTGAGCTTAAATGCTCCACTCCAAC 552 481 75 Antisense
GAAGACCTGTTCCAACTGGACTTGG 704 337 171 Antisense
GACATTGTCTGTCCAAAATCCCACA 31 371 239 Antisense
CGTCTTCATCTCTTACATCGATCAA 260 247 265 Antisense
ACATCGTGCGTGCTTCAACTTTATC 643 105 292 Antisense
AAACGACGAGCATGTTCTCTGGCGT 416 125 337 Antisense
GAACTCTACTGTCAATTACCGTATC 86 345 376 Antisense
GTTCGACGATCCATTCGAGACCCAA 664 439 409 Antisense
CGAGACCCAATTCAAGTCCGACAAC 523 245 424 Antisense
GTCCGACAACGAGATCTTCGCTCAT 598 475 439 Antisense
Sequence Source Affymetrix Proprietary Database