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[173571_s_at]

Description CEK130E6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D68367 /WB_GENE_ID=T27E4.6 /WP=CE14257 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130e6 : 5prime end, single read.
Cluster 6grp_total > 47      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 48.8
(-1.2)
M 		58.4
(-0)
A 		33.6
(-3)
A 		83.5
(3)
P 		50
B 61
(-3)
A 		70.6
(0.7)
A 		76.6
(3)
A 		70.2
(0.5)
P 		16
C 65
(0.1)
A 		62.7
(-0.1)
M 		18.1
(-3)
A 		110.3
(3)
P 		92
avr 58.3
(-0.9) 		63.9
(-0.2) 		42.8
(-3) 		88
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 58.6
(0.7)
P 		75.4
(2.1)
A 		12
(-3)
A 		86.9
(3)
P 		65
(1.2)
M 		59.7
(0.8)
A 		75
B 87.1
(3)
P 		62.9
(-0)
P 		47.8
(-1.9)
A 		61.3
(-0.2)
A 		38.8
(-3)
P 		68.8
(0.7)
P 		48
C 54.9
(-0.7)
A 		81.9
(1.4)
P 		43.1
(-1.6)
A 		37.7
(-2)
A 		24.5
(-3)
A 		103.2
(3)
P 		79
avr 66.9
(1.6) 		73.4
(2.5) 		34.3
(-3) 		62
(0.9) 		42.8
(-1.8) 		77.2
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 17.8
(3)
M 		12.7
(-0.4)
A 		8.8
(-3)
A 		12.2
(-0.7)
P 		9
B 19.5
(3)
A 		17.4
(0.2)
A 		17.8
(0.7)
A 		15
(-3)
P 		5
C 21.5
(3)
A 		18
(1.6)
M 		6.3
(-3)
A 		18.6
(1.9)
P 		15
avr 19.6
(3) 		16
(0.5) 		11
(-3) 		15.3
(0) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10.8
(-1)
P 		26.8
(3)
A 		2.6
(-3)
A 		22
(1.8)
P 		19.6
(1.2)
M 		14.5
(-0)
A 		24
B 30.3
(3)
P 		20.9
(-0)
P 		11.6
(-3)
A 		16.2
(-1.5)
A 		15.8
(-1.7)
P 		25.7
(1.5)
P 		19
C 20.3
(-0.2)
A 		25
(0.9)
P 		11
(-2.2)
A 		7.6
(-3)
A 		7.9
(-2.9)
A 		34.5
(3)
P 		27
avr 20.5
(1.4) 		24.2
(2.7) 		8.4
(-3) 		15.3
(-0.5) 		14.4
(-0.8) 		24.9
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173571_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25135
Sequence Type Exemplar sequence
Representative Public ID CEK130E6F NCBI
Target Description CEK130E6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T27E4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D68367 /WB_GENE_ID=T27E4.6 /WP=CE14257 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk130e6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072951 NCBI Caenorhabditis elegans T27E4.6 (T27E4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000044641 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9072490:9076115:-1 11/11 None
T27E4.6 ENSEMBL cdna:known chromosome:CEL140:V:9072452:9076115:-1 gene:T27E4.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000044631 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9072463-9076117(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27E4.6
Entrez Gene 179284 Entrez gene
SwissProt Q23054 EMBL-EBI
WormBase CE14257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04837 Hypothetical protein T27E4.6 [Caenorhabditis elegans] ref|NP_505352.1| T27E4.6 [Caenorhabditis elegans] 0.0
blast CAE58792 Hypothetical protein CBG01998 [Caenorhabditis briggsae] 7.0E-86
blast CAB01113 Hypothetical protein C06B3.2 [Caenorhabditis elegans] ref|NP_506446.1| C06B3.2 [Caenorhabditis elegans] 1.0E-82
blast CAE58792 Hypothetical protein CBG01998 [Caenorhabditis briggsae] 9.0E-79
blast CAB01113 Hypothetical protein C06B3.2 [Caenorhabditis elegans] ref|NP_506446.1| C06B3.2 [Caenorhabditis elegans] 1.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505352.1 9 202-224,363-385,400-422,469-491,496-518,575-597,612-634,646-668,681-703
T27E4.6 9 202-224,363-385,400-422,469-491,496-518,575-597,612-634,646-668,681-703
GENEFINDER00000044641 9 202-224,312-334,349-371,418-440,445-467,524-546,561-583,595-617,630-652
Sequence
Target Sequence 
>C. ELEGANS:173571_S_AT
ggtagctctaattttcggacactttggcacaagtcagctggaaaaagctctcaccaacgt
ttctactcgagcagtttggtcaatatgtcttatgtggattataatttccactgaattgaa
atcggccggtcccatcggacactatctcgagcatccgttttggcgtcccttcggaaaatt
atctttctgtgcatttattgttcatcatatgctgctatattttttattcaatatacaaga
agaagcgcctaagtacacgagtttctggcacgagtatttccactacaccattccgatcgt
catctattcatatttcctggcttttttcttgagcgtcgtcgttgaaatcccaattttaag
aatcgacagactaattatagaccagtttgttccagtatcaaaaattgagaagaagacaga
tgtagaagaagacgatagtttcaaggataccagcaatagaagcgacaatactgatggaag
tagcaagaaaattaaaaagagcccagaaaatcaagaaactgattaccaatcaagaaacgc
ctattcacctaatgagcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAGCTCTAATTTTCGGACACTTT 369 505 1780 Antisense
GGACACTTTGGCACAAGTCAGCTGG 11 527 1796 Antisense
ACGTTTCTACTCGAGCAGTTTGGTC 346 93 1836 Antisense
CTGAATTGAAATCGGCCGGTCCCAT 460 203 1890 Antisense
TCCCATCGGACACTATCTCGAGCAT 324 597 1909 Antisense
AGCGCCTAAGTACACGAGTTTCTGG 416 81 2023 Antisense
GTCATCTATTCATATTTCCTGGCTT 453 467 2078 Antisense
TTCCTGGCTTTTTTCTTGAGCGTCG 298 697 2093 Antisense
TGAGCGTCGTCGTTGAAATCCCAAT 371 569 2109 Antisense
TATAGACCAGTTTGTTCCAGTATCA 357 661 2155 Antisense
AACGCCTATTCACCTAATGAGCCTC 313 145 2315 Antisense
Sequence Source Affymetrix Proprietary Database