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[173567_s_at]

Description CEK080DYR /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T02E9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D71708 /WB_GENE_ID=T02E9.2 /WP=CE13064 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80d11 : 3prime end, single read.
Cluster 6grp_total > 10      4grp_total > 49      6grp_cgc > 64      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3406
1 2 3 4 range
A 13.9
(-3)
A 		3414.7
(3)
P 		2923.6
(2.1)
P 		122.2
(-2.8)
A 		3401
B 8.8
(-3)
A 		2693.2
(2.5)
P 		2963.9
(3)
P 		86.6
(-2.8)
A 		2955
C 14.8
(-3)
A 		2485.5
(2.1)
P 		2900.1
(3)
P 		97.8
(-2.8)
A 		2885
avr 12.5
(-3) 		2864.5
(2.9) 		2929.2
(3) 		102.2
(-2.8) 		2917

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2296
1 2 3 4 5 6 range
A 89
(-3)
A 		2232.3
(3)
P 		1358.3
(0.6)
P 		1537.4
(1.1)
P 		1322.9
(0.5)
P 		399.3
(-2.1)
P 		2143
B 109.2
(-3)
A 		2385.1
(3)
P 		1380.2
(0.4)
P 		1451
(0.5)
P 		1125.9
(-0.3)
P 		318.4
(-2.4)
P 		2276
C 123.1
(-3)
A 		2382.8
(3)
P 		1270.7
(0)
P 		1194.1
(-0.2)
P 		1559.5
(0.8)
P 		334.4
(-2.4)
P 		2260
avr 107.1
(-3) 		2333.4
(3) 		1336.4
(0.3) 		1394.2
(0.5) 		1336.1
(0.3) 		350.7
(-2.3) 		2226
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1008
1 2 3 4 range
A 5.1
(-3)
A 		741.2
(2.8)
P 		764.3
(3)
P 		17.9
(-2.9)
A 		759
B 2.8
(-3)
A 		665.2
(2.8)
P 		686.8
(3)
P 		18.5
(-2.9)
A 		684
C 4.9
(-3)
A 		714.6
(1.2)
P 		1010.8
(3)
P 		16.5
(-2.9)
A 		1006
avr 4.3
(-3) 		707
(2.2) 		820.6
(3) 		17.6
(-2.9) 		816

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 778
1 2 3 4 5 6 range
A 16.4
(-3)
A 		793.9
(3)
P 		295.8
(-0.8)
P 		389.9
(-0.1)
P 		399.2
(-0)
P 		97.2
(-2.4)
P 		778
B 38
(-3)
A 		793.9
(3)
P 		335.1
(-0.6)
P 		384.3
(-0.3)
P 		457.4
(0.3)
P 		118.7
(-2.4)
P 		756
C 45.6
(-3)
A 		727.1
(3)
P 		323.4
(-0.6)
P 		240.1
(-1.3)
P 		504.6
(1)
P 		112
(-2.4)
P 		682
avr 33.3
(-3) 		771.6
(3) 		318.1
(-0.7) 		338.1
(-0.5) 		453.7
(0.4) 		109.3
(-2.4) 		738
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173567_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25433
Sequence Type Exemplar sequence
Representative Public ID CEK080DYR NCBI
Target Description CEK080DYR /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T02E9.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D71708 /WB_GENE_ID=T02E9.2 /WP=CE13064 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk80d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028923(9), NM_001028922(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028923 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-7) (grl-7) mRNA, complete cds. 9/11 None
NM_001028922 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-7) (grl-7) mRNA, complete cds. 11/11 None
SNAP00000026339 ENSEMBL cdna:SNAP chromosome:CEL140:V:11347544:11349599:-1 11/11 None
GENEFINDER00000026344 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11347544:11349599:-1 11/11 None
T02E9.2.1 ENSEMBL cdna:known chromosome:CEL140:V:11347480:11349602:-1 gene:T02E9.2 11/11 None
T02E9.2.2 ENSEMBL cdna:known chromosome:CEL140:V:11347480:11349600:-1 gene:T02E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11347544-11349600(-) 100.0 100.0
Public Domain and Genome References
Ensembl T02E9.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07652 Hypothetical protein T02E9.2a [Caenorhabditis elegans] ref|NP_001024093.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-114
blast CAI91177 Hypothetical protein T02E9.2b [Caenorhabditis elegans] ref|NP_001024094.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-103
blast CAI91177 Hypothetical protein T02E9.2b [Caenorhabditis elegans] ref|NP_001024094.1| GRound-Like (grd related) family member (grl-7) [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.3E-34
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 2.3E-34
Sequence
Target Sequence 
>C. ELEGANS:173567_S_AT
agcccaagtcgcggaagttgctacagctcaggaatcggctccaccaccatcagaagctgc
ttacactggggaacaagaagtagtagcttcccttgcccgtgaagagccaaactaccagaa
cactggcaccaatgtgatcgaagcggctcagcacgcttccgagcttggaaaccaggccgc
tgccgctgccgccaaggtcgcagaagtcgttgaagaagaagaagagccaatcaaaaagaa
agacgaaggaaagactacacatatgaagaccgttaaagctccagctgctgcttcctcaac
cactgccgctgctgcctcgacatctacagaatttccagttggagaagagattgttgcaga
caccaacgaaaaggaagttgatatcagtgaacttcaccttaccgatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCCCAAGTCGCGGAAGTTGCTACA 682 79 442 Antisense
TGCTACAGCTCAGGAATCGGCTCCA 428 579 460 Antisense
CTCCACCACCATCAGAAGCTGCTTA 193 235 480 Antisense
CAAGAAGTAGTAGCTTCCCTTGCCC 504 163 515 Antisense
TGCCCGTGAAGAGCCAAACTACCAG 386 577 535 Antisense
GGCACCAATGTGATCGAAGCGGCTC 650 535 566 Antisense
TCAGCACGCTTCCGAGCTTGGAAAC 325 625 589 Antisense
CCGCCAAGGTCGCAGAAGTCGTTGA 80 261 630 Antisense
TGAAGACCGTTAAAGCTCCAGCTGC 301 573 705 Antisense
CTGCTGCCTCGACATCTACAGAATT 343 237 750 Antisense
CAGTGAACTTCACCTTACCGATGAC 3 209 826 Antisense
Sequence Source Affymetrix Proprietary Database