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[173565_s_at]

Description CEK033F8F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C05C8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D36487 /WB_GENE_ID=C05C8.6 /WP=CE07924 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33f8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 44      4grp_high_8_8 > 24      6grp_highest_nonorm > 95      6grp_total > 86      4grp_total > 39      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 570.8
(3)
P 		415.1
(-3)
P 		434.6
(-2.2)
P 		479.1
(-0.5)
P 		156
B 511.7
(3)
P 		436.3
(-0.4)
P 		378.6
(-3)
P 		473.2
(1.3)
P 		133
C 587.2
(3)
P 		413.8
(-3)
P 		499.9
(-0)
P 		448.3
(-1.8)
P 		173
avr 556.6
(3) 		421.7
(-3) 		437.7
(-2.3) 		466.9
(-1) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 703
1 2 3 4 5 6 range
A 426.4
(-3)
P 		479.1
(-2.5)
P 		530.4
(-2.1)
P 		647.7
(-1)
P 		731
(-0.3)
P 		1102.9
(3)
P 		677
B 439.4
(-3)
P 		475.6
(-2.6)
P 		531.9
(-2)
P 		601.3
(-1.2)
P 		732.2
(0.2)
P 		994.1
(3)
P 		555
C 400.1
(-3)
P 		477.4
(-2.2)
P 		521
(-1.8)
P 		759.6
(0.5)
P 		749.9
(0.4)
P 		1008.7
(3)
P 		609
avr 422
(-3) 		477.4
(-2.5) 		527.8
(-2) 		669.5
(-0.6) 		737.7
(0.1) 		1035.2
(3) 		613
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 207.8
(3)
P 		90.1
(-2.1)
P 		113.6
(-1.1)
P 		70.1
(-3)
P 		138
B 163.2
(3)
P 		107.8
(-1.4)
P 		87.7
(-3)
P 		100.8
(-2)
P 		76
C 194.4
(3)
P 		119
(-0.8)
P 		174.2
(2)
P 		75.6
(-3)
P 		119
avr 188.5
(3) 		105.6
(-1.7) 		125.2
(-0.6) 		82.2
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 78.6
(-3)
P 		170.4
(-0.1)
P 		115.5
(-1.8)
P 		164.3
(-0.3)
P 		220.6
(1.5)
P 		268.5
(3)
P 		190
B 152.9
(-2.4)
P 		158.3
(-2.3)
P 		129.2
(-3)
P 		159.3
(-2.3)
P 		297.5
(1.2)
P 		370.7
(3)
P 		242
C 148.3
(-2.5)
P 		145.7
(-2.6)
P 		132.6
(-3)
P 		152.8
(-2.4)
P 		242.7
(0.2)
P 		337.7
(3)
P 		205
avr 126.6
(-3) 		158.1
(-2) 		125.8
(-3) 		158.8
(-2) 		253.6
(0.8) 		325.6
(3) 		200
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173565_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25256
Sequence Type Exemplar sequence
Representative Public ID CEK033F8F NCBI
Target Description CEK033F8F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C05C8.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D36487 /WB_GENE_ID=C05C8.6 /WP=CE07924 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33f8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072438 NCBI Caenorhabditis elegans C05C8.6 (C05C8.6) mRNA, complete cds. 11/11 None
GENEFINDER00000024630 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7237612:7239719:-1 11/11 None
C05C8.6 ENSEMBL cdna:known chromosome:CEL140:V:7237527:7239723:-1 gene:C05C8.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024625 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7237538-7239721(-) 98.79 100.0
Public Domain and Genome References
Gene Title
Ensembl C05C8.6
Entrez Gene 179117 Entrez gene
SwissProt O16313 EMBL-EBI
WormBase CE07924 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.3127.1.S1_AT similar to BTB/POZ domain containing protein 9 cfa
DROSOPHILA_2:1639721_AT dm
DROSGENOME1:144824_AT dm
CHICKEN:GGAAFFX.6372.1.S1_S_AT BTB (POZ) domain containing 9 gga
HG-U133_PLUS_2:235248_AT BTB (POZ) domain containing 9 hs
HG-U133B:235248_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:234682_AT BTB (POZ) domain containing 9 hs
HG-U133B:234682_AT BTB (POZ) domain containing 9 hs
HU35KSUBA:N98799_AT BTB (POZ) domain containing 9 hs
HU35KSUBB:RC_H39093_S_AT BTB (POZ) domain containing 9 hs
HU35KSUBD:RC_T23787_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS2.100256.1.S1_3P_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.32913.0.S1_3P_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.307123.0.S1_3P_S_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.307123.0.S1_3P_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.100256.0.S1_3P_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:1553375_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:229867_AT BTB (POZ) domain containing 9 hs
HG-U133B:229867_AT BTB (POZ) domain containing 9 hs
HG-U95B:45906_AT BTB (POZ) domain containing 9 hs
HG-U95B:56117_AT BTB (POZ) domain containing 9 hs
HU35KSUBB:RC_R38348_AT BTB (POZ) domain containing 9 hs
HU35KSUBB:RC_H40242_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS2.407316.1.S1_3P_S_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS2.129262.1.S1_3P_S_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS2.129262.1.S1_3P_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.270487.0.S1_3P_X_AT BTB (POZ) domain containing 9 hs
U133_X3P:HS.159388.0.S1_3P_AT BTB (POZ) domain containing 9 hs
U133_X3P:233041_3P_X_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:1557669_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:1560309_S_AT BTB (POZ) domain containing 9 hs
HG-U133A_2:215261_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:215261_AT BTB (POZ) domain containing 9 hs
HG-U133A:215261_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:233041_X_AT BTB (POZ) domain containing 9 hs
HG-U133B:233041_X_AT BTB (POZ) domain containing 9 hs
HG-U95AV2:36381_AT BTB (POZ) domain containing 9 hs
HG-U95B:44413_AT BTB (POZ) domain containing 9 hs
HG-U133_PLUS_2:232943_AT BTB (POZ) domain containing 9 hs
HG-U133B:232943_AT BTB (POZ) domain containing 9 hs
HG-U95B:45046_R_AT BTB (POZ) domain containing 9 hs
HG-U95C:66247_AT BTB (POZ) domain containing 9 hs
HG-U95C:66717_AT BTB (POZ) domain containing 9 hs
HU35KSUBB:RC_AA019721_AT BTB (POZ) domain containing 9 hs
HU35KSUBC:RC_N62516_AT BTB (POZ) domain containing 9 hs
MG-U74BV2:115537_AT BTB (POZ) domain containing 9 mm
MG-U74BV2:163612_AT BTB (POZ) domain containing 9 mm
MOE430B:1431230_A_AT BTB (POZ) domain containing 9 mm
MOUSE430_2:1431230_A_AT BTB (POZ) domain containing 9 mm
MOE430B:1434769_AT BTB (POZ) domain containing 9 mm
MOUSE430_2:1434769_AT BTB (POZ) domain containing 9 mm
MOE430B:1458043_AT MKIAA1880 protein mm
MOUSE430_2:1458043_AT MKIAA1880 protein mm
MOE430B:1440548_AT MKIAA1880 protein mm
MOUSE430_2:1440548_AT MKIAA1880 protein mm
MOE430B:1444827_AT MKIAA1880 protein mm
MOUSE430_2:1444827_AT MKIAA1880 protein mm
MOUSE430_2:1445220_AT MKIAA1880 protein mm
MOE430B:1445220_AT MKIAA1880 protein mm
MOE430B:1459011_AT MKIAA1880 protein mm
MOUSE430_2:1459011_AT MKIAA1880 protein mm
MU19KSUBC:TC40003_AT MKIAA1880 protein mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65373 Hypothetical protein C05C8.6 [Caenorhabditis elegans] ref|NP_504839.1| C05C8.6 [Caenorhabditis elegans] 0.0
blast CAE72034 Hypothetical protein CBG19116 [Caenorhabditis briggsae] 0.0
blast CAE72029 Hypothetical protein CBG19111 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000210 EMBL-EBI BTB/POZ domain 1.8E-30
Sequence
Target Sequence 
>C. ELEGANS:173565_S_AT
gaatcgaagccatgttctctaccgaaacaatgcctgtcgaacctgtgcacaaagtcatag
ttcctcatcgaaacatcacaacgatagaaaatcacgcacgggttgttgaaggagtttctc
gatgtcggaatgctcttatcaacggggattcctcatcctacgactgggatactggataca
cgtgtcatcaaattggaagtggtctcatcatgattcaacttgctcagccctacattatat
cttcaatgcgaattttgttatggaattgtgatgatcgattctactcgtattatgttgccg
tatcgaagaatcaagacgaatgggttacgattgtcgaccgcaccaatgaagaatgtcatg
gatggcaagaactcatatttgatcctcttccagttgtgtatattcgacttgttggtaccc
ggaattccataaacgaagtctttcacgttgtacatctcgaggctccctcaaacgttccaa
ttgccata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCGAAGCCATGTTCTCTACCGA 19 329 1266 Antisense
GCCTGTCGAACCTGTGCACAAAGTC 470 283 1297 Antisense
GTCGGAATGCTCTTATCAACGGGGA 76 473 1389 Antisense
GATTCCTCATCCTACGACTGGGATA 323 433 1412 Antisense
ATCATGATTCAACTTGCTCAGCCCT 707 29 1472 Antisense
GCTCAGCCCTACATTATATCTTCAA 449 301 1487 Antisense
TTACGATTGTCGACCGCACCAATGA 657 681 1590 Antisense
GAACTCATATTTGATCCTCTTCCAG 509 349 1634 Antisense
GACTTGTTGGTACCCGGAATTCCAT 155 371 1671 Antisense
TTTCACGTTGTACATCTCGAGGCTC 216 673 1706 Antisense
TCCCTCAAACGTTCCAATTGCCATA 70 597 1729 Antisense
Sequence Source Affymetrix Proprietary Database