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[173564_at]

Description C49385 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37D8A.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49385 /WB_GENE_ID=Y37D8A.4 /WP=CE20209 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk469f9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 95      6grp_total > 98      4grp_total > 04      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1890
1 2 3 4 range
A 712.4
(-1.5)
P 		257.1
(-3)
P 		293.3
(-2.9)
P 		2131.1
(3)
P 		1874
B 711.4
(-0.9)
P 		280.4
(-2.8)
P 		241.6
(-3)
P 		1611.4
(3)
P 		1370
C 676.8
(-1.3)
P 		323.4
(-2.8)
P 		278.1
(-3)
P 		1722.7
(3)
P 		1445
avr 700.2
(-1.3) 		287
(-2.9) 		271
(-3) 		1821.7
(3) 		1551

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 969
1 2 3 4 5 6 range
A 317.5
(-3)
P 		579.5
(-1.1)
P 		624.5
(-0.8)
P 		569.4
(-1.2)
P 		920.8
(1.4)
P 		1144.3
(3)
P 		827
B 309.1
(-3)
P 		587.7
(-1.1)
P 		312
(-3)
P 		649.7
(-0.7)
P 		1043
(2)
P 		1185.3
(3)
P 		876
C 477
(-3)
P 		614
(-2)
P 		545.2
(-2.5)
P 		523.6
(-2.7)
P 		817.7
(-0.4)
P 		1277.7
(3)
P 		801
avr 367.9
(-3) 		593.7
(-1.4) 		493.9
(-2.1) 		580.9
(-1.5) 		927.2
(1) 		1202.4
(3) 		835
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 259.4
(1.8)
P 		55.8
(-3)
P 		76.7
(-2.5)
P 		311.9
(3)
P 		256
B 226.9
(0.6)
P 		69.2
(-2.7)
P 		56
(-3)
P 		343.4
(3)
P 		287
C 224.1
(1)
P 		93
(-3)
P 		96.9
(-2.9)
P 		290.5
(3)
P 		198
avr 236.8
(1.1) 		72.7
(-3) 		76.5
(-2.9) 		315.3
(3) 		243

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 58.5
(-3)
P 		206.1
(1)
P 		136
(-0.9)
P 		144.4
(-0.7)
P 		277.8
(3)
P 		278.6
(3)
P 		220
B 107.6
(-2.5)
P 		195.6
(-1)
P 		75.8
(-3)
P 		172.1
(-1.4)
P 		423.8
(2.7)
P 		442
(3)
P 		366
C 176.8
(-1.7)
P 		187.3
(-1.5)
P 		138.8
(-2.4)
P 		105.3
(-3)
P 		264.6
(-0)
P 		427.7
(3)
P 		322
avr 114.3
(-3) 		196.3
(-1.2) 		116.9
(-2.9) 		140.6
(-2.4) 		322.1
(1.6) 		382.8
(3) 		269
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24048
Sequence Type Exemplar sequence
Representative Public ID C49385 NCBI
Target Description C49385 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=Y37D8A.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49385 /WB_GENE_ID=Y37D8A.4 /WP=CE20209 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk469f9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067269(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067269 NCBI Caenorhabditis elegans Y37D8A.4 (Y37D8A.4) mRNA, complete cds. 11/11 None
Y37D8A.4 ENSEMBL cdna:known chromosome:CEL140:III:12837129:12838826:-1 gene:Y37D8A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12837135-12838823(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37D8A.4
Entrez Gene 176699 Entrez gene
SwissProt Q9XWW5 EMBL-EBI
WormBase CE20209 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21524 Hypothetical protein Y37D8A.4 [Caenorhabditis elegans] ref|NP_499670.1| Y37D8A.4 [Caenorhabditis elegans] 1.0E-127
blast CAE69539 Hypothetical protein CBG15748 [Caenorhabditis briggsae] 1.0E-87
Sequence
Target Sequence 
>C. ELEGANS:173564_AT
actcgagcatagaagcttcaacgtcttctacactgaccttttatctgtatttacttcttg
ctactgtagcccacattcctacagtaatctttccccaaatttttgtgtgtgtgtgttcgt
tgcacgggttataccacatttaccaaatctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCGAGCATAGAAGCTTCAACGTC 670 97 686 Antisense
TCAACGTCTTCTACACTGACCTTTT 521 631 703 Antisense
ACTGACCTTTTATCTGTATTTACTT 116 93 717 Antisense
GTATTTACTTCTTGCTACTGTAGCC 510 453 732 Antisense
TCTTGCTACTGTAGCCCACATTCCT 110 619 741 Antisense
TAGCCCACATTCCTACAGTAATCTT 249 651 752 Antisense
TTCCTACAGTAATCTTTCCCCAAAT 445 697 761 Antisense
CTTTCCCCAAATTTTTGTGTGTGTG 74 221 774 Antisense
GTGTGTTCGTTGCACGGGTTATACC 509 487 796 Antisense
GTTGCACGGGTTATACCACATTTAC 303 439 804 Antisense
GGTTATACCACATTTACCAAATCTC 77 507 812 Antisense
Sequence Source Affymetrix Proprietary Database