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[173563_s_at]

Description C40954 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C35C5.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40954 /WB_GENE_ID=C35C5.3B /WP=CE18543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk256g7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 60      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 55      6grp_total > 60      4grp_total > 56      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1169
1 2 3 4 range
A 1747.3
(-1.1)
P 		1520.9
(-2.5)
P 		2396.8
(3)
P 		1440.9
(-3)
P 		956
B 1444.3
(-3)
P 		2092
(3)
P 		1855.2
(0.8)
P 		1713.1
(-0.5)
P 		648
C 1717.7
(-0.9)
P 		1801.8
(-0.5)
P 		2486.5
(3)
P 		1317.5
(-3)
P 		1169
avr 1636.4
(-1.8) 		1804.9
(-0.5) 		2246.2
(3) 		1490.5
(-3) 		756

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1408
1 2 3 4 5 6 range
A 1410.4
(-0.5)
P 		1408.6
(-0.5)
P 		1730.1
(3)
P 		1627.7
(1.9)
P 		1728.1
(3)
P 		1184.4
(-3)
P 		546
B 2183.6
(3)
P 		1515.8
(-1.8)
P 		2035.7
(1.9)
P 		2055.7
(2.1)
P 		1617.2
(-1.1)
P 		1355.9
(-3)
P 		828
C 1893.7
(-0.1)
P 		1482.9
(-1.9)
P 		1245.1
(-3)
P 		2592.8
(3)
P 		1492.1
(-1.9)
P 		1363.1
(-2.5)
P 		1348
avr 1829.2
(1) 		1469.1
(-1.7) 		1670.3
(-0.2) 		2092.1
(3) 		1612.5
(-0.6) 		1301.1
(-3) 		791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 656
1 2 3 4 range
A 636.2
(3)
P 		330.2
(-1.3)
P 		626.6
(2.9)
P 		210.9
(-3)
P 		425
B 460.6
(0.8)
P 		516.7
(3)
P 		429.9
(-0.4)
P 		365.1
(-3)
P 		152
C 568.6
(0.2)
P 		518
(-0.2)
P 		866.6
(3)
P 		222.2
(-3)
P 		644
avr 555.1
(1.6) 		455
(0) 		641
(3) 		266.1
(-3) 		375

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 500
1 2 3 4 5 6 range
A 260
(-3)
P 		501
(2.5)
P 		376.8
(-0.3)
P 		412.8
(0.5)
P 		521.5
(3)
P 		288.4
(-2.3)
P 		262
B 759.8
(3)
P 		504.6
(-2.8)
P 		494.3
(-3)
P 		544.5
(-1.9)
P 		657
(0.7)
P 		505.6
(-2.7)
P 		266
C 701.9
(3)
P 		452.5
(-0.9)
P 		316.9
(-3)
P 		521.4
(0.2)
P 		482.8
(-0.4)
P 		456.3
(-0.8)
P 		385
avr 573.9
(3) 		486
(0) 		396
(-3) 		492.9
(0.3) 		553.8
(2.3) 		416.8
(-2.3) 		178
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173563_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25883
Sequence Type Exemplar sequence
Representative Public ID C40954 NCBI
Target Description C40954 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C35C5.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40954 /WB_GENE_ID=C35C5.3B /WP=CE18543 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk256g7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077528(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077528 NCBI Caenorhabditis elegans C35C5.3b (C35C5.3) mRNA, complete cds. 11/11 None
C35C5.3b ENSEMBL cdna:known chromosome:CEL140:X:11545037:11547484:-1 gene:C35C5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181343 2 1 NM_077528 173563_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11545091-11547485(-) 98.72 100.0
Public Domain and Genome References
Ensembl C35C5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01692 Hypothetical protein C35C5.3b [Caenorhabditis elegans] ref|NP_509929.1| C35C5.3b [Caenorhabditis elegans] pir||T19755 hypothetical protein C35C5.3b - Caenorhabditis elegans 1.0E-147
blast CAB01684 Hypothetical protein C35C5.3a [Caenorhabditis elegans] ref|NP_509930.1| C35C5.3a [Caenorhabditis elegans] pir||T19747 hypothetical protein C35C5.3a - Caenorhabditis elegans 1.0E-144
blast Q9U3N5 Putative selT-like protein C35C5.3 precursor 1.0E-140
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509929.1 2 13-35,140-162
C35C5.3b 2 13-35,140-162
Sequence
Target Sequence 
>C. ELEGANS:173563_S_AT
caacagactgtctaaaacgctatgttttcaatttgacaccgtgttaccataattatttac
aatgtattcttgctgctcaaactgattcattccctcactcgtcatccgacgccttatttt
attaagttaaattaactttttatttgtttctcaacgtgtgtaaattatttgcagtcataa
aaattctcgccacttttatttcacctctaatgattttctattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACAGACTGTCTAAAACGCTATGT 413 189 776 Antisense
AACGCTATGTTTTCAATTTGACACC 501 145 791 Antisense
TTGACACCGTGTTACCATAATTATT 141 703 808 Antisense
ACAATGTATTCTTGCTGCTCAAACT 538 113 834 Antisense
TGCTCAAACTGATTCATTCCCTCAC 46 581 849 Antisense
CGTCATCCGACGCCTTATTTTATTA 707 245 875 Antisense
TTTATTTGTTTCTCAACGTGTGTAA 703 673 914 Antisense
ACGTGTGTAAATTATTTGCAGTCAT 206 95 929 Antisense
GCAGTCATAAAAATTCTCGCCACTT 18 313 946 Antisense
GCCACTTTTATTTCACCTCTAATGA 493 279 964 Antisense
TTCACCTCTAATGATTTTCTATTCA 312 687 975 Antisense
Sequence Source Affymetrix Proprietary Database