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[173560_s_at]

Description C43855 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H19N07.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43855 /WB_GENE_ID=H19N07.3 /WP=CE16184 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk334d9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 78      6grp_total > 57      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2282
1 2 3 4 range
A 3583.9
(3)
P 		2374.2
(-0.5)
P 		1520.3
(-3)
P 		2210.3
(-1)
P 		2064
B 2928.2
(3)
P 		2237.9
(-0.6)
P 		2204.6
(-0.7)
P 		1766.7
(-3)
P 		1162
C 3802.6
(3)
P 		1898.9
(-2.5)
P 		1924.1
(-2.4)
P 		1712.3
(-3)
P 		2090
avr 3438.2
(3) 		2170.3
(-1.9) 		1883
(-3) 		1896.4
(-2.9) 		1555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1672
1 2 3 4 5 6 range
A 1659.1
(0.2)
P 		1536.4
(-0.5)
P 		1988.2
(1.9)
P 		1467.4
(-0.8)
P 		1043.9
(-3)
P 		2208.1
(3)
P 		1164
B 2065.3
(1.4)
P 		1271.5
(-3)
P 		1770.7
(-0.2)
P 		1326.7
(-2.7)
P 		1488.8
(-1.8)
P 		2354
(3)
P 		1083
C 1756
(-0.9)
P 		1253.2
(-3)
P 		1431.4
(-2.2)
P 		1246.2
(-3)
P 		1354.5
(-2.6)
P 		2715.9
(3)
P 		1470
avr 1826.8
(-0.2) 		1353.7
(-2.7) 		1730.1
(-0.7) 		1346.8
(-2.7) 		1295.7
(-3) 		2426
(3) 		1130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1016
1 2 3 4 range
A 1304.9
(3)
P 		515.4
(-1.8)
P 		397.4
(-2.5)
P 		323.5
(-3)
P 		981
B 933.8
(3)
P 		552.7
(-1.1)
P 		510.8
(-1.6)
P 		376.5
(-3)
P 		557
C 1258.8
(3)
P 		545.9
(-1.4)
P 		670.6
(-0.6)
P 		288.7
(-3)
P 		970
avr 1165.8
(3) 		538
(-1.5) 		526.3
(-1.6) 		329.6
(-3) 		836

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 659
1 2 3 4 5 6 range
A 305.8
(-3)
P 		546.4
(3)
P 		433
(0.2)
P 		372.2
(-1.3)
P 		315
(-2.8)
P 		537.6
(2.8)
P 		241
B 718.6
(1.2)
P 		423.2
(-2.2)
P 		430
(-2.1)
P 		351.4
(-3)
P 		604.9
(-0.1)
P 		877.8
(3)
P 		526
C 650.9
(0.6)
P 		382.4
(-1.8)
P 		364.3
(-2)
P 		250.6
(-3)
P 		438.3
(-1.3)
P 		909.2
(3)
P 		659
avr 558.4
(0.1) 		450.7
(-1.3) 		409.1
(-1.9) 		324.7
(-3) 		452.7
(-1.3) 		774.9
(3) 		450
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173560_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25476
Sequence Type Exemplar sequence
Representative Public ID C43855 NCBI
Target Description C43855 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H19N07.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43855 /WB_GENE_ID=H19N07.3 /WP=CE16184 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk334d9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073426 NCBI Caenorhabditis elegans H19N07.3 (H19N07.3) mRNA, complete cds. 11/11 None
SNAP00000011317 ENSEMBL cdna:SNAP chromosome:CEL140:V:11121539:11122293:-1 11/11 None
GENEFINDER00000011319 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11121539:11123897:-1 11/11 None
H19N07.3.1 ENSEMBL cdna:known chromosome:CEL140:V:11121333:11122293:-1 gene:H19N07.3 11/11 None
H19N07.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11121333:11122295:-1 gene:H19N07.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11121427-11122294(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H19N07.3
Entrez Gene 179539 Entrez gene
SwissProt O45625 EMBL-EBI
WormBase CE16184 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF82410 diacylglycerol acyltransferase [Caenorhabditis elegans] 0.0
blast CAA99773 Hypothetical protein H19N07.4 [Caenorhabditis elegans] emb|CAB07399.1| Hypothetical protein H19N07.4 [Caenorhabditis elegans] ref|NP_505828.3| H19N07.4 [Caenorhabditis elegans] 0.0
blast CAE75170 Hypothetical protein CBG23107 [Caenorhabditis briggsae] 0.0
blast CAB07398 Hypothetical protein H19N07.3 [Caenorhabditis elegans] ref|NP_505827.1| H19N07.3 [Caenorhabditis elegans] 3.0E-92
blast CAE75169 Hypothetical protein CBG23106 [Caenorhabditis briggsae] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004299 EMBL-EBI Membrane bound O-acyl transferase, MBOAT 2.6E-53
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000011319 7 7-29,39-61,146-165,195-217,266-285,289-308,321-343
Sequence
Target Sequence 
>C. ELEGANS:173560_S_AT
tttggtctacgatcgcgagcacaacttcaagaaatggtacatctactggattcccaagac
taagatgcttggtgtaaaagacgataaagatgtcgtttacgagaaaatgtgcacacttca
agaacgtaccgatatcctcaaagtgagcaagtcattggtggaggaaaagtggagttccct
cttctctgaaagtggccttcatatcgaagaagtttgtgagaaggagcttgtgctcacgtt
tgcacttcaaagaaatattactctagagcgtacggagctttctggaagattcgatgagtg
cctctacttggaatatttgcgtctcaagacgctaaccaatgtttcgccaatgaaaagaaa
acgtactgcctcaaccgtcgaacatgttatcagatccgatgatatcaagcccattcttgc
tccaaaaagcgatcctgtcaaaaaacgaacaactcgtatggctgccaaggccagtggacc
agagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGGTCTACGATCGCGAGCACAAC 285 667 22 Antisense
GGTACATCTACTGGATTCCCAAGAC 100 505 57 Antisense
AGAACGTACCGATATCCTCAAAGTG 418 1 142 Antisense
CCTCTTCTCTGAAAGTGGCCTTCAT 424 267 199 Antisense
AGGAGCTTGTGCTCACGTTTGCACT 649 55 243 Antisense
GATTCGATGAGTGCCTCTACTTGGA 465 431 309 Antisense
GACGCTAACCAATGTTTCGCCAATG 227 377 349 Antisense
CTGCCTCAACCGTCGAACATGTTAT 428 235 387 Antisense
TATCAAGCCCATTCTTGCTCCAAAA 695 659 424 Antisense
GAACAACTCGTATGGCTGCCAAGGC 305 353 468 Antisense
CTGCCAAGGCCAGTGGACCAGAGTT 77 237 483 Antisense
Sequence Source Affymetrix Proprietary Database