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[173559_at]

Description C44326 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T26C11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C44326 /WB_GENE_ID=T26C11.4 /WP=CE05023 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343h5 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 80      6grp_total > 35      4grp_total > 23      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 273
1 2 3 4 range
A 418.2
(3)
P 		188
(-3)
P 		298.1
(-0.1)
P 		276.5
(-0.7)
P 		230
B 342.4
(1.4)
P 		261.3
(-1.1)
P 		201.5
(-3)
P 		392
(3)
P 		191
C 460.5
(3)
P 		242.2
(-3)
P 		299
(-1.4)
P 		381.8
(0.8)
P 		218
avr 407
(3) 		230.5
(-3) 		266.2
(-1.8) 		350.1
(1.1) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 243.1
(0.1)
P 		354.9
(3)
P 		233.4
(-0.1)
P 		121.3
(-3)
P 		192.1
(-1.2)
P 		206.7
(-0.8)
P 		234
B 313.4
(1.3)
P 		351.3
(3)
P 		305.7
(0.9)
P 		221.1
(-3)
P 		225.2
(-2.8)
P 		248.5
(-1.7)
P 		130
C 301.4
(3)
P 		240.9
(0.1)
P 		185.7
(-2.6)
P 		178.1
(-3)
P 		196.2
(-2.1)
P 		265.6
(1.3)
P 		123
avr 286
(1.7) 		315.7
(3) 		241.6
(-0.1) 		173.5
(-3) 		204.5
(-1.7) 		240.3
(-0.2) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 152.3
(3)
P 		40.8
(-3)
P 		77.9
(-1)
P 		40.5
(-3)
P 		112
B 109.2
(3)
P 		64.5
(-1.3)
P 		46.7
(-3)
P 		83.5
(0.5)
P 		63
C 152.4
(3)
P 		69.6
(-2.6)
P 		104.2
(-0.3)
P 		64.4
(-3)
P 		88
avr 138
(3) 		58.3
(-3) 		76.3
(-1.6) 		62.8
(-2.7) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 44.8
(-2.1)
P 		126.2
(3)
P 		50.8
(-1.7)
P 		30.8
(-3)
P 		58
(-1.3)
P 		50.3
(-1.8)
P 		95
B 109
(2.2)
P 		116.9
(3)
P 		74.2
(-1.4)
P 		58.6
(-3)
P 		91.5
(0.4)
P 		92.7
(0.5)
P 		58
C 111.7
(3)
P 		73.5
(-0)
P 		47.3
(-2.1)
P 		35.8
(-3)
P 		63.5
(-0.8)
P 		88.9
(1.2)
P 		76
avr 88.5
(1.4) 		105.5
(3) 		57.4
(-1.5) 		41.7
(-3) 		71
(-0.2) 		77.3
(0.3) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26164
Sequence Type Exemplar sequence
Representative Public ID C44326 NCBI
Target Description C44326 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T26C11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C44326 /WB_GENE_ID=T26C11.4 /WP=CE05023 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk343h5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075938(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075938 NCBI Caenorhabditis elegans T26C11.4 (T26C11.4) mRNA, complete cds. 11/11 None
GENEFINDER00000040403 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1840581:1845501:-1 10/11 None
T26C11.4 ENSEMBL cdna:known chromosome:CEL140:X:1840561:1845531:-1 gene:T26C11.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040393 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1840595-1845502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T26C11.4
Entrez Gene 180502 Entrez gene
SwissProt Q22809 EMBL-EBI
WormBase CE05023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508339 T26C11.4 [Caenorhabditis elegans] gb|AAC48213.1| Hypothetical protein T26C11.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173559_AT
cagaggaatacctgcagatattgcaagaaaatggagtttgaagaaaccgagtttcatcat
tactccctgtgtccctttgccaagatgaagttacgtctgtagatttgccgactatgacta
cgactattcatattttcaatcattccgttgagcttttttctccacttaactgtgaaaatc
ttgccccacgtcagatcttgttagatctcaaaatgtttttgtccaaatcttctagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGAGGAATACCTGCAGATATTGCA 3 205 1665 Antisense
ACCGAGTTTCATCATTACTCCCTGT 402 89 1710 Antisense
CCTGTGTCCCTTTGCCAAGATGAAG 637 265 1730 Antisense
GAAGTTACGTCTGTAGATTTGCCGA 48 337 1751 Antisense
GATTTGCCGACTATGACTACGACTA 588 403 1766 Antisense
GACTACGACTATTCATATTTTCAAT 244 373 1780 Antisense
ATTTTCAATCATTCCGTTGAGCTTT 160 15 1796 Antisense
TGAGCTTTTTTCTCCACTTAACTGT 208 569 1813 Antisense
AACTGTGAAAATCTTGCCCCACGTC 255 143 1832 Antisense
GCCCCACGTCAGATCTTGTTAGATC 144 283 1847 Antisense
AATGTTTTTGTCCAAATCTTCTAGT 644 163 1876 Antisense
Sequence Source Affymetrix Proprietary Database