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[173558_at]

Description CEK086A1F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC443.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D67722 /WB_GENE_ID=ZC443.3 /WP=CE06587 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86a1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 92      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 55      6grp_total > 83      4grp_total > 12      6grp_highest_sub > 04_05      6grp_high1_sub > 04_05      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3735
1 2 3 4 range
A 1613.9
(-0)
P 		874.3
(-2.1)
P 		530.9
(-3)
P 		2729.5
(3)
P 		2199
B 1689.7
(-1.1)
P 		996.5
(-2.3)
P 		537.7
(-3)
P 		4265.4
(3)
P 		3728
C 1678.5
(-1.4)
P 		1061.9
(-2.5)
P 		750.8
(-3)
P 		4166.9
(3)
P 		3416
avr 1660.7
(-1) 		977.6
(-2.3) 		606.5
(-3) 		3720.6
(3) 		3114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2108
1 2 3 4 5 6 range
A 1281.9
(-2.4)
P 		1080
(-3)
P 		1570.1
(-1.5)
P 		2534.9
(1.4)
P 		3066.1
(3)
P 		1338.2
(-2.2)
P 		1986
B 1469.1
(-2.3)
P 		1251.4
(-3)
P 		1453.8
(-2.4)
P 		2786
(1.8)
P 		3187.9
(3)
P 		1640.1
(-1.8)
P 		1937
C 1424.5
(-2.2)
P 		1286.1
(-2.8)
P 		1222.6
(-3)
P 		2778.1
(3)
P 		2462.1
(1.8)
P 		1574.9
(-1.6)
P 		1556
avr 1391.8
(-2.3) 		1205.8
(-3) 		1415.5
(-2.3) 		2699.7
(2.3) 		2905.4
(3) 		1517.7
(-1.9) 		1700
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 784
1 2 3 4 range
A 587.6
(3)
P 		189.8
(-2.3)
P 		138.8
(-3)
P 		399.5
(0.5)
P 		449
B 538.8
(0.2)
P 		246.1
(-2.1)
P 		124.6
(-3)
P 		909
(3)
P 		784
C 555.6
(1)
P 		305.3
(-2.4)
P 		261.7
(-3)
P 		702.6
(3)
P 		441
avr 560.7
(1.7) 		247.1
(-2.1) 		175
(-3) 		670.4
(3) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1059
1 2 3 4 5 6 range
A 236.3
(-3)
P 		384.1
(-1.7)
P 		341.9
(-2.1)
P 		642.9
(0.5)
P 		925.2
(3)
P 		325.8
(-2.2)
P 		689
B 511.2
(-2)
P 		416.5
(-2.6)
P 		353
(-3)
P 		737.9
(-0.5)
P 		1295.2
(3)
P 		611.6
(-1.4)
P 		942
C 528
(-0.3)
P 		392.4
(-2)
P 		311.2
(-3)
P 		558.7
(0.1)
P 		796.7
(3)
P 		527.2
(-0.3)
P 		486
avr 425.2
(-2.2) 		397.7
(-2.4) 		335.4
(-3) 		646.5
(-0.2) 		1005.7
(3) 		488.2
(-1.6) 		670
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25330
Sequence Type Exemplar sequence
Representative Public ID CEK086A1F NCBI
Target Description CEK086A1F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC443.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D67722 /WB_GENE_ID=ZC443.3 /WP=CE06587 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86a1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073806(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073806 NCBI Caenorhabditis elegans ZC443.3 (ZC443.3) mRNA, complete cds. 11/11 None
ZC443.3.1 ENSEMBL cdna:known chromosome:CEL140:V:12814907:12816711:-1 gene:ZC443.3 11/11 None
ZC443.3.2 ENSEMBL cdna:known chromosome:CEL140:V:12814909:12816713:-1 gene:ZC443.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12814917-12816710(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC443.3
Entrez Gene 179758 Entrez gene
SwissProt Q23321 EMBL-EBI
WormBase CE06587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA99948 Hypothetical protein ZC443.3 [Caenorhabditis elegans] ref|NP_506207.1| ZC443.3 [Caenorhabditis elegans] 0.0
blast CAE64004 Hypothetical protein CBG08598 [Caenorhabditis briggsae] 1.0E-124
blast CAA99946 Hypothetical protein ZC443.4 [Caenorhabditis elegans] ref|NP_506208.1| ZC443.4 [Caenorhabditis elegans] 3.0E-18
Sequence
Target Sequence 
>C. ELEGANS:173558_AT
gaaatgctataggtgccaagtatcttgcttttctgccaacgggtacttgtgcactctgta
acgtgtttcttgcttcaaatttctcattaacattcttccgaattttttcattttcaaaat
tgttcaataatgccaaagaaccgtttgtttttctttagttattaaattgaacaaactgta
actaaatgtttttaacattcttatttgtacatagaaatgtaacttctctaattgtttcat
a

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGCTATAGGTGCCAAGTATCT 577 361 1226 Antisense
AGGTGCCAAGTATCTTGCTTTTCTG 538 57 1236 Antisense
CTTTTCTGCCAACGGGTACTTGTGC 429 213 1253 Antisense
TCTGCCAACGGGTACTTGTGCACTC 650 607 1257 Antisense
GGTACTTGTGCACTCTGTAACGTGT 298 505 1267 Antisense
GCACTCTGTAACGTGTTTCTTGCTT 72 317 1276 Antisense
GTGTTTCTTGCTTCAAATTTCTCAT 87 487 1288 Antisense
AAATTTCTCATTAACATTCTTCCGA 206 117 1302 Antisense
CAATAATGCCAAAGAACCGTTTGTT 564 181 1350 Antisense
GTTTTTAACATTCTTATTTGTACAT 487 447 1413 Antisense
ATGTAACTTCTCTAATTGTTTCATA 707 47 1442 Antisense
Sequence Source Affymetrix Proprietary Database