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[173557_s_at]

Description C67695 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F26A1.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67695 /WB_GENE_ID=F26A1.12 /WP=CE02680 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307f9 : 5prime end, single read.
Cluster 6grp_total > 71      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 4.1
(-3)
A 		8.5
(2.4)
A 		6.8
(0.3)
A 		9
(3)
A 		5
B 6.2
(-2.7)
A 		31.5
(-0.2)
A 		64.3
(3)
A 		2.8
(-3)
A 		62
C 20.8
(1.7)
A 		13.8
(-0.6)
A 		24.9
(3)
A 		6.3
(-3)
A 		19
avr 10.4
(-2) 		17.9
(-0.3) 		32
(3) 		6
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 14
(0)
A 		25.8
(3)
A 		16.5
(0.7)
A 		9
(-1.2)
A 		1.8
(-3)
A 		9.9
(-1)
A 		24
B 16.9
(-1.1)
A 		5.1
(-2.8)
A 		8.3
(-2.3)
A 		7.3
(-2.4)
A 		45.2
(3)
A 		3.4
(-3)
A 		42
C 5.8
(-2.8)
A 		11.3
(-2.2)
A 		32.9
(0.1)
A 		59.8
(3)
A 		7.2
(-2.7)
A 		4
(-3)
A 		56
avr 12.2
(-1) 		14.1
(-0.5) 		19.2
(1.1) 		25.4
(3) 		18.1
(0.8) 		5.8
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.5
(-0.6)
A 		1.8
(3)
A 		1.8
(3)
A 		1.3
(-3)
A 		1
B 2
(-2.4)
A 		7.8
(0)
A 		14.9
(3)
A 		0.6
(-3)
A 		14
C 6.9
(1.6)
A 		4
(-0.7)
A 		8.7
(3)
A 		1.1
(-3)
A 		8
avr 3.5
(-1) 		4.5
(-0.2) 		8.5
(3) 		1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 2.6
(-1.6)
A 		9.2
(3)
A 		3.6
(-0.9)
A 		2.3
(-1.8)
A 		0.5
(-3)
A 		2.4
(-1.7)
A 		9
B 5.9
(-1.4)
A 		1.7
(-2.9)
A 		2
(-2.8)
A 		1.9
(-2.8)
A 		18.4
(3)
A 		1.3
(-3)
A 		17
C 2.1
(-2.6)
A 		3.5
(-1.8)
A 		8.4
(1)
A 		12
(3)
A 		2.3
(-2.4)
A 		1.3
(-3)
A 		11
avr 3.5
(-1) 		4.8
(0.4) 		4.7
(0.3) 		5.4
(1.1) 		7.1
(3) 		1.7
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173557_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23873
Sequence Type Exemplar sequence
Representative Public ID C67695 NCBI
Target Description C67695 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F26A1.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C67695 /WB_GENE_ID=F26A1.12 /WP=CE02680 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk307f9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065601(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065601 NCBI Caenorhabditis elegans F26A1.12 (F26A1.12) mRNA, complete cds. 11/11 None
SNAP00000001879 ENSEMBL cdna:SNAP chromosome:CEL140:III:4843454:4844371:-1 11/11 None
GENEFINDER00000001892 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4843454:4844404:-1 11/11 None
F26A1.12 ENSEMBL cdna:known chromosome:CEL140:III:4843405:4844371:-1 gene:F26A1.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4843454-4844372(-) 92.96 100.0
Public Domain and Genome References
Gene Title
Ensembl F26A1.12
Entrez Gene 175641 Entrez gene
SwissProt Q19801 EMBL-EBI
WormBase CE02680 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_498002 F26A1.12 [Caenorhabditis elegans] gb|AAA68253.1| Hypothetical protein F26A1.12 [Caenorhabditis elegans] 1.0E-109
blast CAE70484 Hypothetical protein CBG17079 [Caenorhabditis briggsae] 4.0E-50
blast CAE70484 Hypothetical protein CBG17079 [Caenorhabditis briggsae] 5.0E-50
blast CAE71115 Hypothetical protein CBG17968 [Caenorhabditis briggsae] 6.0E-36
Sequence
Target Sequence 
>C. ELEGANS:173557_S_AT
tgaccacggcgatagtagcgacggaagctattctgatagcagtggtgaaggtagaggaca
tcatcataagcatggtccgagacctccaagaccaaatcgaccaccaagaccgccaccagc
aacacctccaccaacaacacctgcaccaagttgtccaggtggttggtctcttattcacag
gcgtcgtggaccatggtgcattcaagttttcaatggagctgcaggtttagaaggatcaaa
caatgcttgtagagctcagggagcagttctttcatccgtggaaaatgctcaagaacgaga
aacaattgctcggctaggattggaaaaaatgttgccaactggttggaagtatggaactat
tcgtgtgggactgagaaagaattcacaaggagcgccatggtacaacacagacgggagcac
cgatgccaacaacctagaaggcgtcctttggagcccagcggaaccgagaaatggaaattg
gggtggagttcagttgaattgtgctacaatgtggttatgggggggaatattcgaaggagg
ccgtatccacggacagttcttcaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACCACGGCGATAGTAGCGACGGA 612 563 79 Antisense
CGAGACCTCCAAGACCAAATCGACC 180 243 156 Antisense
CAACACCTGCACCAAGTTGTCCAGG 396 189 213 Antisense
GGTGGTTGGTCTCTTATTCACAGGC 463 497 236 Antisense
TCACAGGCGTCGTGGACCATGGTGC 377 625 253 Antisense
TCAGGGAGCAGTTCTTTCATCCGTG 396 623 334 Antisense
GAATTCACAAGGAGCGCCATGGTAC 363 325 457 Antisense
GCCATGGTACAACACAGACGGGAGC 10 281 472 Antisense
GCACCGATGCCAACAACCTAGAAGG 349 315 495 Antisense
CTAGAAGGCGTCCTTTGGAGCCCAG 188 225 512 Antisense
CCGTATCCACGGACAGTTCTTCACA 227 265 619 Antisense
Sequence Source Affymetrix Proprietary Database