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[173552_s_at]

Description C69110 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01B12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69110 /WB_GENE_ID=M01B12.3 /WP=CE18061 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311a10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 08      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 86      6grp_total > 19      4grp_total > 60      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 867
1 2 3 4 range
A 1177.5
(2.2)
P 		1105.1
(1.4)
P 		1264
(3)
P 		652.1
(-3)
P 		612
B 1246.5
(1.5)
P 		1321.6
(2.1)
P 		1429
(3)
P 		718.9
(-3)
P 		710
C 1271.1
(2.7)
P 		1201.9
(2.1)
P 		1313.7
(3)
P 		561.8
(-3)
P 		752
avr 1231.7
(2.1) 		1209.5
(1.9) 		1335.6
(3) 		644.3
(-3) 		691

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 971.9
(0.2)
P 		835.4
(-2.8)
P 		922.8
(-0.9)
P 		851.3
(-2.4)
P 		1096.4
(3)
P 		826.4
(-3)
P 		270
B 1232.6
(3)
P 		917.5
(-3)
P 		927.5
(-2.8)
P 		1032
(-0.8)
P 		1073.9
(-0)
P 		989.5
(-1.6)
P 		315
C 1059.1
(3)
P 		946
(0.9)
P 		731
(-3)
P 		1034.9
(2.6)
P 		837.8
(-1)
P 		1024.8
(2.4)
P 		328
avr 1087.9
(3) 		899.6
(-2) 		860.4
(-3) 		972.7
(-0) 		1002.7
(0.8) 		946.9
(-0.7) 		228
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 363
1 2 3 4 range
A 428.7
(3)
P 		239.9
(-0.4)
P 		330.4
(1.2)
P 		95.5
(-3)
P 		333
B 397.5
(3)
P 		326.4
(1.3)
P 		331.1
(1.4)
P 		153.2
(-3)
P 		244
C 420.8
(2.4)
P 		345.6
(1.1)
P 		457.9
(3)
P 		94.7
(-3)
P 		363
avr 415.7
(3) 		304
(0.8) 		373.1
(2.2) 		114.5
(-3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 257
1 2 3 4 5 6 range
A 179.2
(-3)
P 		297.1
(1.7)
P 		201
(-2.1)
P 		215.9
(-1.5)
P 		330.8
(3)
P 		201.2
(-2.1)
P 		152
B 428.9
(2.8)
P 		305.4
(-0.7)
P 		225.2
(-3)
P 		273.4
(-1.6)
P 		436.3
(3)
P 		369
(1.1)
P 		211
C 392.6
(3)
P 		288.7
(-0)
P 		186.1
(-3)
P 		208.1
(-2.4)
P 		271.1
(-0.5)
P 		343.1
(1.6)
P 		207
avr 333.6
(2.5) 		297.1
(0.9) 		204.1
(-3) 		232.5
(-1.8) 		346.1
(3) 		304.4
(1.2) 		142
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22530
Sequence Type Exemplar sequence
Representative Public ID C69110 NCBI
Target Description C69110 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01B12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69110 /WB_GENE_ID=M01B12.3 /WP=CE18061 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311a10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058698 NCBI Caenorhabditis elegans ARp2/3 compleX component family member (arx-7) (arx-7) mRNA, complete cds. 11/11 None
GENEFINDER00000040605 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3069497:3070141:-1 11/11 None
SNAP00000040602 ENSEMBL cdna:SNAP chromosome:CEL140:I:3069505:3070129:-1 10/11 None
M01B12.3 ENSEMBL cdna:known chromosome:CEL140:I:3069393:3070141:-1 gene:M01B12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3069403-3070142(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol arx-7
Ensembl M01B12.3
Entrez Gene 171882 Entrez gene
SwissProt O61861 EMBL-EBI
WormBase CE18061 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1599299_AT similar to Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) cfa
CANINE:1595593_AT similar to Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) cfa
CANINE_2:CFA.18603.1.S1_AT similar to Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) cfa
CANINE_2:CFAAFFX.20654.1.S1_AT similar to Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) cfa
CANINE_2:CFAAFFX.20654.1.S1_S_AT similar to Actin-related protein 2/3 complex subunit 5 (ARP2/3 complex 16 kDa subunit) (p16-ARC) cfa
DROSOPHILA_2:1634204_AT dm
DROSGENOME1:145651_AT dm
HG-U133_PLUS_2:211963_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-U133A_2:211963_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-FOCUS:211963_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-U133A:211963_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HU35KSUBA:AF006088_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HU35KSUBB:RC_W55964_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
U133_X3P:HS2.82425.2.S1_3P_S_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
U133_X3P:HS.82425.1.S2_3P_A_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-U133_PLUS_2:1555797_A_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-U95AV2:38392_AT actin related protein 2/3 complex, subunit 5, 16kDa hs
U133_X3P:HS2.126222.1.A1_3P_AT Actin related protein 2/3 complex, subunit 5, 16kDa hs
HG-U133_PLUS_2:1569325_AT Actin related protein 2/3 complex, subunit 5, 16kDa hs
MOE430A:1448129_AT actin related protein 2/3 complex, subunit 5 mm
MOUSE430_2:1448129_AT actin related protein 2/3 complex, subunit 5 mm
MOUSE430A_2:1448129_AT actin related protein 2/3 complex, subunit 5 mm
MU11KSUBB:W19022_S_AT actin related protein 2/3 complex, subunit 5 mm
MOE430B:1444568_AT Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA mm
MOUSE430_2:1444568_AT Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA mm
MG-U74AV2:96277_AT Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA mm
MU19KSUBC:TC39048_S_AT Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA mm
RG-U34C:RC_AI169266_AT actin related protein 2/3 complex, subunit 5 (predicted) rn
RAE230A:1390022_AT actin related protein 2/3 complex, subunit 5 (predicted) rn
RAT230_2:1390022_AT actin related protein 2/3 complex, subunit 5 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30833 regulation of actin filament polymerization inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5856 cytoskeleton inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17561 Arp2/3 complex component protein 7 [Caenorhabditis elegans] ref|NP_491099.1| ARp2/3 compleX component family member (arx-7) [Caenorhabditis elegans] 4.0E-81
blast AAC17561 Arp2/3 complex component protein 7 [Caenorhabditis elegans] ref|NP_491099.1| ARp2/3 compleX component family member (arx-7) [Caenorhabditis elegans] 1.0E-77
blast CAE60572 Hypothetical protein CBG04201 [Caenorhabditis briggsae] 1.0E-75
blast CAE60572 Hypothetical protein CBG04201 [Caenorhabditis briggsae] 1.0E-72
blast CAE65717 Hypothetical protein CBG10797 [Caenorhabditis briggsae] 2.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR006789 EMBL-EBI ARP2/3 complex 16 kDa subunit (p16-Arc) 4.2E-87
Pfam IPR006789 EMBL-EBI ARP2/3 complex 16 kDa subunit (p16-Arc) 1.0E-83
Sequence
Target Sequence 
>C. ELEGANS:173552_S_AT
catgcaaaacacctcgtaccgaaagctggatgtggactctttcgacccggaacagtacga
tgagaatgacgaggcagtcgatactcctggacttggacccgatgagcgcgcggttcaggg
atttttgagctcgaatcggcttgaggatgctcttcatgcggctcttctctccccgccact
taaaaccaaagatcagaacgtaaaagaccgcgccacacagctcgtcacaaaagttctgca
atccttcaaaaacgcggaaatcgaggcgactgtccagaagctttcgatagaagaaagtga
tattctcatgaaatacgtctacaaatcaatggaaatcggcgccgacgcggccgtctgtca
gtctttgctcgcgtggcacgctcaactcgtcgcaaaattcggtcacggagccattatgcg
tgtcttctccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCAAAACACCTCGTACCGAAAG 79 203 25 Antisense
AAGCTGGATGTGGACTCTTTCGACC 555 149 47 Antisense
AGTCGATACTCCTGGACTTGGACCC 168 61 100 Antisense
GCGCGGTTCAGGGATTTTTGAGCTC 648 287 132 Antisense
GCTCGAATCGGCTTGAGGATGCTCT 569 299 153 Antisense
TCAGAACGTAAAAGACCGCGCCACA 501 623 217 Antisense
GCTCGTCACAAAAGTTCTGCAATCC 505 299 244 Antisense
CGAGGCGACTGTCCAGAAGCTTTCG 558 249 286 Antisense
CACGCTCAACTCGTCGCAAAATTCG 499 199 401 Antisense
GCAAAATTCGGTCACGGAGCCATTA 24 317 416 Antisense
GGAGCCATTATGCGTGTCTTCTCCG 49 523 431 Antisense
Sequence Source Affymetrix Proprietary Database