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[173551_at]

Description CEK126G6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F32B5.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D68124 /WB_GENE_ID=F32B5.7 /WP=CE28231 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126g6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 19      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 50      6grp_total > 29      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 339
1 2 3 4 range
A 756.9
(-0)
P 		723.8
(-3)
P 		761
(0.3)
P 		790.9
(3)
P 		67
B 550.6
(-3)
P 		889.7
(3)
P 		641.9
(-1.4)
P 		850
(2.3)
P 		339
C 718.1
(-3)
P 		743.9
(-2)
P 		854.9
(2.4)
P 		869.6
(3)
P 		152
avr 675.2
(-3) 		785.8
(1.1) 		752.6
(-0.1) 		836.8
(3) 		162

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 682
1 2 3 4 5 6 range
A 621.5
(1.4)
P 		751.3
(3)
P 		249.4
(-3)
P 		472.6
(-0.3)
P 		553.7
(0.6)
P 		674.2
(2.1)
P 		502
B 687.3
(3)
P 		395.9
(-1.3)
P 		279.8
(-3)
P 		432.7
(-0.7)
P 		472.2
(-0.2)
P 		364.8
(-1.7)
P 		408
C 930.9
(3)
P 		390.9
(-2.3)
P 		527
(-1)
P 		320.6
(-3)
P 		825.5
(2)
P 		321.2
(-3)
P 		610
avr 746.6
(3) 		512.7
(-0.6) 		352.1
(-3) 		408.6
(-2.1) 		617.1
(1) 		453.4
(-1.5) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 275.6
(3)
P 		157.1
(-1.4)
P 		198.9
(0.1)
P 		115.8
(-3)
P 		160
B 175.6
(-0.7)
P 		219.7
(3)
P 		148.7
(-3)
P 		181.1
(-0.3)
P 		71
C 237.7
(0.6)
P 		213.9
(-0.3)
P 		298
(3)
P 		146.6
(-3)
P 		151
avr 229.6
(3) 		196.9
(0.6) 		215.2
(1.9) 		147.8
(-3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 291
1 2 3 4 5 6 range
A 114.6
(-1.3)
P 		267.2
(3)
P 		54.3
(-3)
P 		119.9
(-1.2)
P 		167.1
(0.2)
P 		164.1
(0.1)
P 		213
B 239.1
(3)
P 		131.8
(-0.8)
P 		67.9
(-3)
P 		114.6
(-1.4)
P 		191.8
(1.3)
P 		136
(-0.6)
P 		171
C 345
(3)
P 		119.3
(-1.8)
P 		134.1
(-1.5)
P 		64.5
(-3)
P 		267.1
(1.3)
P 		107.5
(-2.1)
P 		281
avr 232.9
(3) 		172.8
(0.6) 		85.4
(-3) 		99.7
(-2.4) 		208.7
(2) 		135.9
(-0.9) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22499
Sequence Type Exemplar sequence
Representative Public ID CEK126G6F NCBI
Target Description CEK126G6F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F32B5.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D68124 /WB_GENE_ID=F32B5.7 /WP=CE28231 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk126g6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058621(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058621 NCBI Caenorhabditis elegans F32B5.7 (F32B5.7) mRNA, complete cds. 11/11 None
F32B5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:2672951:2682798:-1 gene:F32B5.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F32B5.7.2 3/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2672973-2682730(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F32B5.7
Entrez Gene 171828 Entrez gene
SwissProt O01849 EMBL-EBI
WormBase CE30526 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54209 Hypothetical protein F32B5.7 [Caenorhabditis elegans] ref|NP_491022.2| F32B5.7 [Caenorhabditis elegans] 0.0
blast CAE60491 Hypothetical protein CBG04106 [Caenorhabditis briggsae] 0.0
blast ABA94822 expressed protein [Oryza sativa (japonica cultivar-group)] 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR009836 EMBL-EBI Protein of unknown function DUF1399 3.1E-83
Sequence
Target Sequence 
>C. ELEGANS:173551_AT
gtggatgcggttagaatatcattttattttcttcgactacaaactacgaaaaactacaaa
ctacaagcaatcattatcacatcacaaaacacacgcactttctccgtctctctttcaatt
tgttcttccccatttggaaacattccacaccacatatgacatcaaactaattataatatt
ttattcactgcaccaccactccaaaatatttcatttgaagactatcatgtgatcaatact
gtgtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGATGCGGTTAGAATATCATTTT 152 491 2043 Antisense
ATATCATTTTATTTTCTTCGACTAC 216 21 2058 Antisense
TTATTTTCTTCGACTACAAACTACG 364 679 2066 Antisense
AACTACAAGCAATCATTATCACATC 698 139 2101 Antisense
TATCACATCACAAAACACACGCACT 216 659 2117 Antisense
CACAAAACACACGCACTTTCTCCGT 91 195 2125 Antisense
TCCCCATTTGGAAACATTCCACACC 45 597 2169 Antisense
ATTCCACACCACATATGACATCAAA 647 7 2184 Antisense
TAATATTTTATTCACTGCACCACCA 509 635 2216 Antisense
CCACCACTCCAAAATATTTCATTTG 690 273 2235 Antisense
CTATCATGTGATCAATACTGTGTAT 620 223 2264 Antisense
Sequence Source Affymetrix Proprietary Database