[Home] | [Total List]

[173549_s_at]

Description C70378 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07F10.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70378 /WB_GENE_ID=T07F10.6 /WP=CE21164 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386g12 : 5prime end, single read.
Cluster 6grp_total > 01      4grp_total > 53      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 89.4
(-2.8)
A 		111.1
(3)
A 		92.6
(-2)
A 		88.7
(-3)
A 		22
B 118.6
(3)
A 		51.9
(-0.6)
A 		48
(-0.8)
A 		8
(-3)
A 		111
C 84.3
(1.1)
A 		116.6
(3)
A 		42.2
(-1.4)
A 		16
(-3)
A 		101
avr 97.4
(3) 		93.2
(2.6) 		60.9
(-0.7) 		37.6
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 75.8
(0.3)
A 		73
(-0.2)
A 		91.8
(3)
A 		61.8
(-2)
A 		82
(1.4)
A 		56.1
(-3)
A 		36
B 59.2
(-2.2)
A 		94.5
(3)
A 		54
(-3)
A 		86.5
(1.8)
A 		70.1
(-0.6)
A 		87.9
(2)
A 		41
C 67.3
(1.4)
A 		81.9
(3)
A 		61.6
(0.7)
A 		28.5
(-3)
A 		76.3
(2.4)
A 		30.9
(-2.7)
A 		53
avr 67.4
(-0.8) 		83.1
(3) 		69.1
(-0.4) 		58.9
(-2.9) 		76.1
(1.3) 		58.3
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 32.6
(3)
A 		24.1
(0.4)
A 		24.2
(0.4)
A 		13
(-3)
A 		20
B 37.8
(3)
A 		12.8
(-1.2)
A 		11.1
(-1.4)
A 		1.7
(-3)
A 		36
C 27.9
(1.9)
A 		33.5
(3)
A 		14.7
(-0.7)
A 		2.7
(-3)
A 		31
avr 32.8
(3) 		23.5
(0.9) 		16.7
(-0.6) 		5.8
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 14
(-2.9)
A 		26
(3)
A 		20
(0.1)
A 		15.7
(-2)
A 		24.7
(2.4)
A 		13.7
(-3)
A 		12
B 20.6
(-0.7)
A 		31.4
(2.6)
A 		13.1
(-3)
A 		22.9
(-0)
A 		28.5
(1.7)
A 		32.8
(3)
A 		20
C 24.9
(3)
A 		25
(3)
A 		15.7
(0.1)
A 		5.7
(-3)
A 		24.7
(2.9)
A 		10.3
(-1.6)
A 		19
avr 19.8
(-0.6) 		27.5
(3) 		16.3
(-2.3) 		14.8
(-3) 		26
(2.3) 		18.9
(-1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173549_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25624
Sequence Type Exemplar sequence
Representative Public ID C70378 NCBI
Target Description C70378 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T07F10.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70378 /WB_GENE_ID=T07F10.6 /WP=CE21164 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk386g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073818 NCBI Caenorhabditis elegans T07F10.6 (T07F10.6) mRNA, complete cds. 11/11 None
T07F10.6 ENSEMBL cdna:known chromosome:CEL140:V:12866375:12870507:-1 gene:T07F10.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014611 5/11 Cross Hyb Matching Probes None
SNAP00000014613 5/11 Cross Hyb Matching Probes None
GENEFINDER00000014616 4/11 Cross Hyb Matching Probes None
GENEFINDER00000014618 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12866375-12870479(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07F10.6
Entrez Gene 179764 Entrez gene
SwissProt Q9XVU6 EMBL-EBI
WormBase CE21164 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01246 Hypothetical protein T07F10.6 [Caenorhabditis elegans] ref|NP_506219.1| T07F10.6 [Caenorhabditis elegans] 1.0E-123
blast CAE64727 Hypothetical protein CBG09514 [Caenorhabditis briggsae] 2.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR009673 EMBL-EBI Protein of unknown function DUF1261 1.2E-58
Sequence
Target Sequence 
>C. ELEGANS:173549_S_AT
acctcagacgttatacacttgctacatatcgtatctaggaaaatatggagtagttcctga
tgatggatatttacctccatccgaatttatattaaatcaaatgatgactcatggacttcc
agttatttgcagagattttgaagaactcgtaagttgccttggaactgcttctacttattg
tgtcaatctcaatgtatttgttgcgtatacgactggaagacatcctgatagagaagcact
tgcatacttgcaaaaccacgcattttttgaattcgcttgtggctctggaagagacctttt
tatgaataatcttgattgcattcaaagatcattccaacagattccactaacgaaccgtat
gcagcaatgcggtcaatctagtttggctatcaatgaagattcctgccggtcgactctcca
ggtgactgattgtgttcggcaacaaatgaatgaagcatgtggaccaagtgctggagcggc
tgcttgtggggctgcgacgaatatcgaacgtcgtcttgacttcctggatgcagcctgtct
cacagaaatggatgcacgatgctcagtgtgtcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCTCAGACGTTATACACTTGCTAC 359 87 79 Antisense
GATATTTACCTCCATCCGAATTTAT 596 425 144 Antisense
GGAACTGCTTCTACTTATTGTGTCA 6 531 239 Antisense
AACCACGCATTTTTTGAATTCGCTT 320 147 332 Antisense
GAATTCGCTTGTGGCTCTGGAAGAG 176 325 347 Antisense
GTCGACTCTCCAGGTGACTGATTGT 376 473 487 Antisense
CCAAGTGCTGGAGCGGCTGCTTGTG 453 275 542 Antisense
GCTTGTGGGGCTGCGACGAATATCG 208 307 560 Antisense
TATCGAACGTCGTCTTGACTTCCTG 469 653 580 Antisense
CTGGATGCAGCCTGTCTCACAGAAA 42 241 602 Antisense
GATGCACGATGCTCAGTGTGTCAAC 364 413 629 Antisense
Sequence Source Affymetrix Proprietary Database