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[173548_s_at]

Description C66805 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H06H21.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66805 /WB_GENE_ID=H06H21.6 /WP=CE17964 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233b11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 96      6grp_total > 79      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 1013.6
(3)
P 		666
(-3)
P 		825.2
(-0.3)
P 		670.5
(-2.9)
P 		348
B 959.9
(3)
P 		590.4
(-3)
P 		778.3
(0.1)
P 		660.9
(-1.9)
P 		370
C 813.9
(3)
P 		576.3
(-3)
P 		812.2
(3)
P 		663.8
(-0.8)
P 		238
avr 929.1
(3) 		610.9
(-3) 		805.2
(0.7) 		665.1
(-2) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 910
1 2 3 4 5 6 range
A 796.3
(-1.4)
P 		807.3
(-1.3)
P 		557.2
(-3)
P 		828.9
(-1.2)
P 		961.4
(-0.3)
P 		1465.9
(3)
P 		909
B 792.3
(-1.2)
P 		576.1
(-2.8)
P 		555.9
(-3)
P 		823
(-1)
P 		974.1
(0.1)
P 		1354.6
(3)
P 		799
C 923.9
(1)
P 		562.6
(-3)
P 		785.4
(-0.5)
P 		684.7
(-1.6)
P 		991.5
(1.8)
P 		1098.3
(3)
P 		536
avr 837.5
(-1.2) 		648.7
(-2.9) 		632.8
(-3) 		778.9
(-1.7) 		975.7
(0.1) 		1306.3
(3) 		674
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 369.1
(3)
P 		144.6
(-2)
P 		215.7
(-0.4)
P 		98.1
(-3)
P 		271
B 306.1
(3)
P 		145.8
(-2.8)
P 		180.4
(-1.6)
P 		140.8
(-3)
P 		165
C 269.4
(2.5)
P 		165.7
(-1.1)
P 		283.1
(3)
P 		111.9
(-3)
P 		171
avr 314.9
(3) 		152
(-1.9) 		226.4
(0.3) 		116.9
(-3) 		198

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 384
1 2 3 4 5 6 range
A 146.8
(-2.4)
P 		287.1
(1.2)
P 		121.4
(-3)
P 		210.2
(-0.7)
P 		290.1
(1.3)
P 		356.9
(3)
P 		236
B 275.7
(-0.7)
P 		191.8
(-2.1)
P 		135
(-3)
P 		218
(-1.7)
P 		395.8
(1.2)
P 		505.1
(3)
P 		370
C 342.4
(2.3)
P 		171.7
(-2.1)
P 		199.9
(-1.4)
P 		137.7
(-3)
P 		320.8
(1.8)
P 		367.7
(3)
P 		230
avr 255
(-0.6) 		216.9
(-1.5) 		152.1
(-3) 		188.6
(-2.2) 		335.6
(1.3) 		409.9
(3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173548_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25057
Sequence Type Exemplar sequence
Representative Public ID C66805 NCBI
Target Description C66805 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H06H21.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66805 /WB_GENE_ID=H06H21.6 /WP=CE17964 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk233b11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068247(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068247 NCBI Caenorhabditis elegans H06H21.6 (H06H21.6) mRNA, complete cds. 11/11 None
SNAP00000018254 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4807580:4809954:-1 11/11 None
GENEFINDER00000018260 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4807190:4809954:-1 11/11 None
H06H21.6.1 ENSEMBL cdna:known chromosome:CEL140:IV:4807424:4809964:-1 gene:H06H21.6 11/11 A 
H06H21.6.2 ENSEMBL cdna:known chromosome:CEL140:IV:4807424:4809685:-1 gene:H06H21.6 11/11 None
H06H21.6.3 ENSEMBL cdna:known chromosome:CEL140:IV:4807424:4809687:-1 gene:H06H21.6 11/11 None
H06H21.6.4 ENSEMBL cdna:known chromosome:CEL140:IV:4807429:4809964:-1 gene:H06H21.6 11/11 A 
H06H21.6.5 ENSEMBL cdna:known chromosome:CEL140:IV:4807429:4809685:-1 gene:H06H21.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4807451-4808078(-) 94.48 100.0
Public Domain and Genome References
Gene Title
Ensembl H06H21.6
Entrez Gene 177253 Entrez gene
SwissProt Q8WTJ4 EMBL-EBI
WormBase CE33662 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16852.1.S1_AT similar to UBX domain containing 1 cfa
CANINE_2:CFAAFFX.29101.1.S1_S_AT similar to UBX domain containing 1 cfa
DROSOPHILA_2:1626177_S_AT GDI interacting protein 3 dm
DROSGENOME1:142844_AT GDI interacting protein 3 dm
CHICKEN:GGA.12160.3.S1_A_AT similar to UBX domain containing 1; UBX domain-containing 2; UBX domain-containing 1 gga
HU35KSUBD:RC_W45377_AT UBX domain containing 1 hs
HG-U95C:49749_AT UBX domain containing 1 hs
HG-U133_PLUS_2:223012_AT UBX domain containing 1 hs
HG-U133B:223012_AT UBX domain containing 1 hs
HG-U133_PLUS_2:220757_S_AT UBX domain containing 1 hs
HG-U133A:220757_S_AT UBX domain containing 1 hs
HG-FOCUS:220757_S_AT UBX domain containing 1 hs
HG-U133A_2:220757_S_AT UBX domain containing 1 hs
HU35KSUBA:W79850_AT UBX domain containing 1 hs
HU35KSUBB:RC_W57897_AT UBX domain containing 1 hs
HU35KSUBD:RC_W72263_S_AT UBX domain containing 1 hs
U133_X3P:G13376853_3P_A_AT UBX domain containing 1 hs
U133_X3P:G13160493_3P_AT UBX domain containing 1 hs
HG-U95B:48123_S_AT UBX domain containing 1 hs
MG-U74AV2:97285_F_AT UBX domain containing 1 mm
MG-U74CV2:168944_I_AT UBX domain containing 1 mm
MOE430A:1417557_AT UBX domain containing 1 mm
MOUSE430A_2:1417557_AT UBX domain containing 1 mm
MOUSE430_2:1417557_AT UBX domain containing 1 mm
MU19KSUBA:TC20843_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBA:TC20843_G_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBB:TC34209_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
MU19KSUBC:TC35103_AT UBX domain containing 1, mRNA (cDNA clone MGC:25886 IMAGE:4215883) mm
RG-U34B:RC_AI008393_AT similar to UBX domain-containing protein 1 rn
RG-U34B:RC_AI044855_AT similar to UBX domain-containing protein 1 rn
RG-U34C:RC_AI227815_AT similar to UBX domain-containing protein 1 rn
RAE230A:1389260_AT similar to UBX domain-containing protein 1 rn
RAT230_2:1389260_AT similar to UBX domain-containing protein 1 rn
RG-U34A:RC_H31922_AT Similar to UBX domain-containing protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAL32226 Hypothetical protein H06H21.6 [Caenorhabditis elegans] ref|NP_500648.2| H06H21.6 [Caenorhabditis elegans] 0.0
blast B88678 protein H06H21.6 [imported] - Caenorhabditis elegans 4.0E-56
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000018254 1 59-81
GENEFINDER00000018260 1 59-81
Sequence
Target Sequence 
>C. ELEGANS:173548_S_AT
gaacaaatgaccaattatcgctacaaatatacgttgattcgtgtcagattgcctggaaat
ttgttgatgcagggagtatttggttgccatgaaccattttccgcagtccgtgtcttcgtt
gcttcaactctttccgatgctctttcgacatccgaattcactcttcgtgacgctgccagt
caactcgtggaggatgaatctgcatcgttggctcaactcagtcttgctccagctgctctt
cttcatgtcgtcttcgctgaaaacctgtctgattatggacaaatcgttgccgatgagcat
atcgaaattatccaggagcttgaagcttccgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACAAATGACCAATTATCGCTACA 117 353 68 Antisense
CGTTGATTCGTGTCAGATTGCCTGG 448 247 99 Antisense
TTGCCATGAACCATTTTCCGCAGTC 528 701 151 Antisense
TTCCGATGCTCTTTCGACATCCGAA 269 699 199 Antisense
GACATCCGAATTCACTCTTCGTGAC 60 371 214 Antisense
CGCTGCCAGTCAACTCGTGGAGGAT 160 255 238 Antisense
ATGAATCTGCATCGTTGGCTCAACT 11 45 261 Antisense
CATCGTTGGCTCAACTCAGTCTTGC 455 211 270 Antisense
TTCTTCATGTCGTCTTCGCTGAAAA 193 691 306 Antisense
TCTTCGCTGAAAACCTGTCTGATTA 591 617 318 Antisense
ATCCAGGAGCTTGAAGCTTCCGACT 318 39 377 Antisense
Sequence Source Affymetrix Proprietary Database