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[173547_s_at]

Description C43909 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B1.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43909 /WB_GENE_ID=C36B1.12 /WP=CE05379 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336d12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 77      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 95      6grp_total > 77      4grp_total > 47      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 370
1 2 3 4 range
A 774.8
(3)
P 		405.3
(-3)
P 		460.5
(-2.1)
P 		521.9
(-1.1)
P 		370
B 585.2
(3)
P 		486.2
(-0.4)
P 		408.7
(-3)
P 		481.2
(-0.5)
P 		177
C 671.6
(3)
P 		544.2
(-0)
P 		474.5
(-1.7)
P 		418.9
(-3)
P 		253
avr 677.2
(3) 		478.6
(-2.2) 		447.9
(-3) 		474
(-2.3) 		229

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 561.5
(-2.3)
P 		646.3
(-1.5)
P 		492.9
(-3)
P 		700
(-1)
P 		702
(-1)
P 		1105
(3)
P 		612
B 671.1
(-1.1)
P 		603.3
(-1.9)
P 		516.8
(-3)
P 		570.7
(-2.3)
P 		686.9
(-0.9)
P 		1010.7
(3)
P 		494
C 619.9
(-1.9)
P 		555.5
(-3)
P 		647.3
(-1.5)
P 		704.5
(-0.6)
P 		656.4
(-1.3)
P 		920.8
(3)
P 		365
avr 617.5
(-2.1) 		601.7
(-2.4) 		552.3
(-3) 		658.4
(-1.6) 		681.8
(-1.3) 		1012.2
(3) 		460
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 212
1 2 3 4 range
A 282.1
(3)
P 		88
(-2.7)
P 		120.4
(-1.7)
P 		76.4
(-3)
P 		206
B 186.6
(3)
P 		120.1
(-1.3)
P 		94.7
(-3)
P 		102.5
(-2.5)
P 		92
C 222.3
(3)
P 		156.5
(0.4)
P 		165.4
(0.7)
P 		70.6
(-3)
P 		152
avr 230.3
(3) 		121.5
(-1.4) 		126.8
(-1.2) 		83.2
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 103.5
(-3)
P 		229.8
(1.6)
P 		107.3
(-2.9)
P 		177.5
(-0.3)
P 		211.8
(0.9)
P 		269
(3)
P 		166
B 233.5
(-0.4)
P 		200.8
(-1.2)
P 		125.5
(-3)
P 		151.2
(-2.4)
P 		279.1
(0.7)
P 		376.9
(3)
P 		251
C 229.8
(0.2)
P 		169.5
(-2)
P 		164.7
(-2.2)
P 		141.7
(-3)
P 		212.4
(-0.5)
P 		308.3
(3)
P 		167
avr 188.9
(-1.2) 		200
(-0.8) 		132.5
(-3) 		156.8
(-2.2) 		234.4
(0.3) 		318.1
(3) 		186
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173547_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22930
Sequence Type Exemplar sequence
Representative Public ID C43909 NCBI
Target Description C43909 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B1.12 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43909 /WB_GENE_ID=C36B1.12 /WP=CE05379 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk336d12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025852(11), NM_001025854(11), NM_001025853(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025852 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-1) (imp-1) mRNA, complete cds. 11/11 None
NM_001025854 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-1) (imp-1) mRNA, complete cds. 11/11 None
NM_001025853 NCBI Caenorhabditis elegans IntraMembrane Protease (IMPAS) family member (imp-1) (imp-1) mRNA, complete cds. 11/11 None
SNAP00000022507 ENSEMBL cdna:SNAP chromosome:CEL140:I:8760374:8763486:1 11/11 None
GENEFINDER00000022518 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8760374:8763486:1 11/11 None
C36B1.12.1 ENSEMBL cdna:known chromosome:CEL140:I:8760361:8763794:1 gene:C36B1.12 11/11 None
C36B1.12.2 ENSEMBL cdna:known chromosome:CEL140:I:8760361:8763790:1 gene:C36B1.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8760305-8763418(+) 100.0 100.0
Public Domain and Genome References
Ensembl C36B1.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02277 Hypothetical protein C36B1.12a [Caenorhabditis elegans] ref|NP_001021023.1| IntraMembrane Protease (IMPAS) family member (imp-1) [Caenorhabditis elegans] 0.0
blast CAI79138 Hypothetical protein C36B1.12c [Caenorhabditis elegans] ref|NP_001021025.1| IntraMembrane Protease (IMPAS) family member (imp-1) [Caenorhabditis elegans] 0.0
blast CAI79137 Hypothetical protein C36B1.12b [Caenorhabditis elegans] ref|NP_001021024.1| IntraMembrane Protease (IMPAS) family member (imp-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007369 EMBL-EBI Peptidase A22B, minor histocompatibility antigen H13 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021023.1 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
NP_001021025.1 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
NP_001021024.1 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
C36B1.12.1 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
C36B1.12.2 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
SNAP00000022507 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
GENEFINDER00000022518 10 7-29,232-254,289-311,315-337,370-389,394-416,421-443,505-527,539-561,565-587
Sequence
Target Sequence 
>C. ELEGANS:173547_S_AT
ggcaactggactgagctgtgctgcgaaaggaaaaaacaaaggatatcctgttccaccaat
tgagcaagaatctgttcctgagaaggtcccaatgctcatgcaagttgcacattttaatcc
gatgaacgagtgtttagacatggaaatagaattaggtttccaattcactattctgggact
tggcgatatcgttatgccaggctacctcgttgctcactgcttcacaatgaatggattctc
tgaacgagttcgcctgatctacggattcatttctgttgtcggatacggtatcggactcat
tgtgaccttcttagctctcgcattgatgaaaactgcccaacctgctttgatctatcttgt
cccatcgacactgttcccgatcatcatgctcgcactttgtcgtggagaattcctcaaaat
ttggaatggagttccagtggaatgttcaccattggtgagcgacagaaatgacttgcaagg
aaaaaaatgggtcaattcttcttcttctcctgatgatacaatggaagacatcgaatcaaa
cgctgtaatcgatcaatccaactcttcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAACTGGACTGAGCTGTGCTGCG 385 535 1373 Antisense
GGATATCCTGTTCCACCAATTGAGC 280 509 1413 Antisense
TATCGTTATGCCAGGCTACCTCGTT 293 659 1559 Antisense
CGTTGCTCACTGCTTCACAATGAAT 486 247 1580 Antisense
AACGAGTTCGCCTGATCTACGGATT 108 143 1615 Antisense
CTACGGATTCATTTCTGTTGTCGGA 636 223 1631 Antisense
GGTATCGGACTCATTGTGACCTTCT 23 505 1659 Antisense
CAACCTGCTTTGATCTATCTTGTCC 459 187 1710 Antisense
TCATGCTCGCACTTTGTCGTGGAGA 513 621 1756 Antisense
TCTTCTTCTTCTCCTGATGATACAA 384 617 1869 Antisense
GTAATCGATCAATCCAACTCTTCTA 232 463 1917 Antisense
Sequence Source Affymetrix Proprietary Database