[Home] | [Total List]

[173546_s_at]

Description C70995 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C24F3.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70995 /WB_GENE_ID=C24F3.1B /WP=CE18518 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk438e12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 02      6grp_high1_10_10 > 10      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 46      6grp_total > 50      4grp_total > 58      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2856
1 2 3 4 range
A 3062.8
(-1)
P 		3763.6
(0.6)
P 		4869.1
(3)
P 		2155.7
(-3)
P 		2713
B 3241.3
(-0.5)
P 		4580.7
(3)
P 		4421.9
(2.6)
P 		2298.2
(-3)
P 		2283
C 3004.4
(-0.9)
P 		4266
(1.9)
P 		4797.3
(3)
P 		2013.1
(-3)
P 		2784
avr 3102.8
(-0.8) 		4203.4
(1.8) 		4696.1
(3) 		2155.7
(-3) 		2540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2069
1 2 3 4 5 6 range
A 3373.9
(3)
P 		2758.5
(-0.9)
P 		2930.1
(0.2)
P 		2814.8
(-0.5)
P 		2774.1
(-0.8)
P 		2427.8
(-3)
P 		946
B 3483.2
(3)
P 		2775
(-0.1)
P 		3001.2
(0.9)
P 		3488.1
(3)
P 		2360.4
(-1.9)
P 		2102.7
(-3)
P 		1385
C 2993.1
(-0.1)
P 		3063.1
(0.1)
P 		3630.7
(1.8)
P 		4059.4
(3)
P 		2153.1
(-2.5)
P 		1990.7
(-3)
P 		2069
avr 3283.4
(2.2) 		2865.5
(0.2) 		3187.3
(1.7) 		3454.1
(3) 		2429.2
(-1.8) 		2173.7
(-3) 		1280
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1357
1 2 3 4 range
A 1115.2
(2)
P 		817
(0.1)
P 		1272.9
(3)
P 		315.5
(-3)
P 		957
B 1033.6
(2.1)
P 		1131.3
(3)
P 		1024.7
(2)
P 		489.7
(-3)
P 		642
C 994.5
(-0.1)
P 		1226.5
(1)
P 		1672
(3)
P 		339.4
(-3)
P 		1333
avr 1047.8
(1.2) 		1058.3
(1.3) 		1323.2
(3) 		381.5
(-3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 621
1 2 3 4 5 6 range
A 622
(-2.5)
P 		981
(3)
P 		638.1
(-2.3)
P 		713.9
(-1.1)
P 		837.1
(0.8)
P 		591.1
(-3)
P 		390
B 1212
(3)
P 		923.7
(-0.6)
P 		728.8
(-3)
P 		923.9
(-0.6)
P 		959
(-0.1)
P 		784.1
(-2.3)
P 		483
C 1109.4
(3)
P 		934.7
(0.6)
P 		924.1
(0.5)
P 		816.3
(-1)
P 		696.7
(-2.6)
P 		666.4
(-3)
P 		443
avr 981.1
(3) 		946.5
(2.3) 		763.7
(-1.3) 		818
(-0.3) 		830.9
(0) 		680.5
(-3) 		301
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173546_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24484
Sequence Type Exemplar sequence
Representative Public ID C70995 NCBI
Target Description C70995 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C24F3.1B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70995 /WB_GENE_ID=C24F3.1B /WP=CE18518 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk438e12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069467(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069467 NCBI Caenorhabditis elegans C24F3.1b (C24F3.1) mRNA, complete cds. 11/11 None
C24F3.1b.1 ENSEMBL cdna:known chromosome:CEL140:IV:10219416:10221252:-1 gene:C24F3.1 11/11 A 
C24F3.1b.2 ENSEMBL cdna:known chromosome:CEL140:IV:10219416:10221716:-1 gene:C24F3.1 11/11 A 
C24F3.1b.3 ENSEMBL cdna:known chromosome:CEL140:IV:10219467:10221253:-1 gene:C24F3.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043529 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177902 2 1 NM_069467 173546_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10219477-10221257(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24F3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18772 Hypothetical protein C24F3.1b [Caenorhabditis elegans] ref|NP_501868.1| C24F3.1b [Caenorhabditis elegans] 0.0
blast CAA18770 Hypothetical protein C24F3.1a [Caenorhabditis elegans] ref|NP_501869.1| C24F3.1a [Caenorhabditis elegans] 0.0
blast CAE59907 Hypothetical protein CBG03391 [Caenorhabditis briggsae] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR005547 EMBL-EBI Longevity-assurance protein (LAG1) 1.6E-79
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501868.1 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1b.1 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1b.2 6 35-57,81-103,209-226,230-252,265-287,307-329
C24F3.1b.3 6 35-57,81-103,209-226,230-252,265-287,307-329
Sequence
Target Sequence 
>C. ELEGANS:173546_S_AT
taagaaactgctcatggcgacttccttcgtttccttctatttccaacttcattcttctat
ccattttctatactcgtgaaatttcccctaatttatttaatatttgtaggttctctacat
tatttatttgaattcttgatatcaagcttgattctttaaatcaaaagtgatacaagctct
ctccagtcatccaaaaccctttagtcactgtctcctttcaattgtgatttactttcctcg
ttttttcctgttaaaatgtgcatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGAAACTGCTCATGGCGACTTCC 162 637 1133 Antisense
TCTTCTATCCATTTTCTATACTCGT 318 617 1185 Antisense
CTATACTCGTGAAATTTCCCCTAAT 26 225 1200 Antisense
TTATTTAATATTTGTAGGTTCTCTA 378 679 1225 Antisense
TAGGTTCTCTACATTATTTATTTGA 703 653 1239 Antisense
AAAAGTGATACAAGCTCTCTCCAGT 72 133 1295 Antisense
CAGTCATCCAAAACCCTTTAGTCAC 437 207 1316 Antisense
CATCCAAAACCCTTTAGTCACTGTC 596 209 1320 Antisense
GTCACTGTCTCCTTTCAATTGTGAT 685 465 1336 Antisense
CAATTGTGATTTACTTTCCTCGTTT 518 179 1351 Antisense
TTTTTCCTGTTAAAATGTGCATTTT 630 673 1374 Antisense
Sequence Source Affymetrix Proprietary Database