[Home] | [Total List]

[173545_at]

Description C52017_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M03D4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C52017 /WB_GENE_ID=M03D4.6 /WP=CE17189 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk224f1 : 3prime end, single read.
Cluster 6grp_total > 54      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 6.8
(-3)
A 		7.9
(-2.5)
A 		7.5
(-2.7)
A 		18.9
(3)
A 		12
B 2.8
(-2.3)
A 		9.5
(1.7)
A 		1.7
(-3)
A 		11.7
(3)
A 		10
C 16.8
(-2.2)
A 		15.5
(-2.5)
A 		13.4
(-3)
A 		38.9
(3)
A 		26
avr 8.8
(-2.5) 		11
(-1.7) 		7.5
(-3) 		23.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 4.2
(-2.5)
A 		3
(-3)
A 		16.3
(2.3)
A 		18
(3)
A 		12.7
(0.9)
A 		16.4
(2.4)
A 		15
B 24.8
(3)
A 		5.2
(-2.8)
A 		4.4
(-3)
A 		9.8
(-1.4)
A 		23.8
(2.7)
A 		11
(-1.1)
A 		20
C 22.9
(0.6)
A 		13.7
(-1.1)
A 		35.9
(3)
A 		13.5
(-1.1)
A 		3.3
(-3)
A 		16.2
(-0.6)
A 		33
avr 17.3
(2.2) 		7.3
(-3) 		18.9
(3) 		13.8
(0.4) 		13.3
(0.1) 		14.5
(0.7) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.5
(1.4)
A 		1.7
(-3)
A 		2
(-1.4)
A 		2.8
(3)
A 		1
B 0.9
(-1.6)
A 		2.3
(2.4)
A 		0.4
(-3)
A 		2.5
(3)
A 		2
C 5.6
(0.3)
A 		4.4
(-3)
A 		4.7
(-2.2)
A 		6.6
(3)
A 		2
avr 3
(-0.8) 		2.8
(-1.5) 		2.4
(-3) 		4
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-3)
A 		1.1
(-2.5)
A 		3.6
(1.4)
A 		4.6
(3)
A 		3.8
(1.7)
A 		4
(2.1)
A 		4
B 8.6
(2.2)
A 		1.7
(-2.6)
A 		1.1
(-3)
A 		2.6
(-2)
A 		9.7
(3)
A 		4.1
(-0.9)
A 		9
C 8.5
(2.6)
A 		4.2
(-0.7)
A 		9.1
(3)
A 		2.7
(-1.8)
A 		1.1
(-3)
A 		5.4
(0.2)
A 		8
avr 6
(3) 		2.3
(-3) 		4.6
(0.7) 		3.3
(-1.4) 		4.9
(1.2) 		4.5
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25039
Sequence Type Exemplar sequence
Representative Public ID C52017 NCBI
Target Description C52017_rc /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M03D4.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C52017 /WB_GENE_ID=M03D4.6 /WP=CE17189 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk224f1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068520 NCBI Caenorhabditis elegans M03D4.6 (M03D4.6) mRNA, complete cds. 11/11 None
M03D4.6 ENSEMBL cdna:known chromosome:CEL140:IV:6142917:6145648:-1 gene:M03D4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6142983-6146616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M03D4.6
Entrez Gene 177376 Entrez gene
SwissProt Q21495 EMBL-EBI
WormBase CE37264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24409 Hypothetical protein M03D4.6 [Caenorhabditis elegans] ref|NP_500921.2| M03D4.6 [Caenorhabditis elegans] 0.0
blast AAF99978 Hypothetical protein F56A6.1a [Caenorhabditis elegans] ref|NP_490758.1| F56A6.1a [Caenorhabditis elegans] 4.0E-59
blast AAO38667 Paz/piwi domain-containing protein 1, isoform c [Caenorhabditis elegans] ref|NP_491323.2| PAZ/PIWI domain-containing family member (ppw-1) [Caenorhabditis elegans] 7.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 3.3E-122
Sequence
Target Sequence 
>C. ELEGANS:173545_AT
agatttaacgcataagtccagtatttcaacacgtttttttctcagaatgtattcgtatct
tgcaaattcttctatttcgattttcctctctgaaattgatcttcactgaaaagtaaatct
ccgatgcgtctcccctgggtttttaattatctcaattgacttttttaaccaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATTTAACGCATAAGTCCAGTATT 10 63 1703 Antisense
TAAGTCCAGTATTTCAACACGTTTT 681 635 1715 Antisense
GTATTTCAACACGTTTTTTTCTCAG 573 451 1723 Antisense
TCAACACGTTTTTTTCTCAGAATGT 484 629 1728 Antisense
TTTTCTCAGAATGTATTCGTATCTT 65 677 1739 Antisense
TTCGTATCTTGCAAATTCTTCTATT 577 695 1754 Antisense
AATTCTTCTATTTCGATTTTCCTCT 357 177 1767 Antisense
TTTCCTCTCTGAAATTGATCTTCAC 67 671 1784 Antisense
AAAAGTAAATCTCCGATGCGTCTCC 14 133 1811 Antisense
CCTGGGTTTTTAATTATCTCAATTG 59 267 1836 Antisense
TCTCAATTGACTTTTTTAACCAACA 260 585 1852 Antisense
Sequence Source Affymetrix Proprietary Database