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[173544_at]

Description C48141 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18B12.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48141 /WB_GENE_ID=C18B12.6 /WP=CE08305 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk455g12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 01      6grp_high1_10_10 > 0      4grp_high_8_8 > 63      6grp_highest_nonorm > 71      6grp_total > 09      4grp_total > 56      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 361
1 2 3 4 range
A 226.8
(-0.9)
P 		294.6
(0.8)
A 		379.5
(3)
P 		144.3
(-3)
A 		235
B 278.2
(-0.5)
P 		310.8
(0.5)
P 		394.4
(3)
P 		193.7
(-3)
P 		201
C 203.5
(-3)
P 		284.8
(-1.4)
P 		504.8
(3)
P 		214.1
(-2.8)
P 		301
avr 236.2
(-1.7) 		296.7
(-0.2) 		426.2
(3) 		184
(-3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 222
1 2 3 4 5 6 range
A 378
(3)
P 		318.4
(0.7)
P 		369.3
(2.7)
P 		322.9
(0.9)
P 		264.4
(-1.4)
P 		222.7
(-3)
P 		155
B 444.3
(3)
P 		279.3
(-1.9)
P 		242.7
(-3)
P 		387.1
(1.3)
P 		275.1
(-2)
P 		320.4
(-0.7)
P 		202
C 316.6
(0.4)
P 		314
(0.3)
P 		303.4
(-0.1)
P 		387.2
(3)
P 		226.7
(-3)
P 		268.4
(-1.4)
P 		161
avr 379.6
(3) 		303.9
(-0.7) 		305.1
(-0.6) 		365.7
(2.3) 		255.4
(-3) 		270.5
(-2.3) 		124
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 82.6
(1.7)
P 		63.9
(0.3)
A 		99.2
(3)
P 		21.1
(-3)
A 		78
B 88.7
(2.7)
P 		76.7
(1.2)
P 		91.4
(3)
P 		41.3
(-3)
P 		50
C 67.4
(-1.7)
P 		81.9
(-1)
P 		176
(3)
P 		36.1
(-3)
P 		140
avr 79.6
(0.1) 		74.2
(-0.2) 		122.2
(3) 		32.8
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 69.7
(-1.4)
P 		113.2
(3)
P 		80.4
(-0.3)
P 		81.9
(-0.2)
P 		79.8
(-0.4)
P 		54.2
(-3)
P 		59
B 154.6
(3)
P 		93
(-0.9)
P 		58.9
(-3)
P 		102.5
(-0.3)
P 		111.8
(0.3)
P 		119.5
(0.8)
P 		96
C 117.3
(3)
P 		95.8
(0.1)
P 		77.2
(-2.5)
P 		77.9
(-2.4)
P 		73.4
(-3)
P 		89.8
(-0.8)
P 		44
avr 113.9
(3) 		100.7
(1.1) 		72.2
(-3) 		87.4
(-0.8) 		88.3
(-0.7) 		87.8
(-0.8) 		42
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26114
Sequence Type Exemplar sequence
Representative Public ID C48141 NCBI
Target Description C48141 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18B12.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C48141 /WB_GENE_ID=C18B12.6 /WP=CE08305 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk455g12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078093(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078093 NCBI Caenorhabditis elegans C18B12.6 (C18B12.6) mRNA, complete cds. 11/11 None
C18B12.6 ENSEMBL cdna:known chromosome:CEL140:X:15003992:15007224:-1 gene:C18B12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15004053-15006860(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18B12.6
Entrez Gene 181597 Entrez gene
SwissProt Q93541 EMBL-EBI
WormBase CE32590 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01751 Hypothetical protein C18B12.6 [Caenorhabditis elegans] emb|CAA20929.2| Hypothetical protein C18B12.6 [Caenorhabditis elegans] ref|NP_510494.2| C18B12.6 [Caenorhabditis elegans] 0.0
blast CAE63269 Hypothetical protein CBG07646 [Caenorhabditis briggsae] 0.0
blast XP_395190 PREDICTED: similar to ENSANGP00000003384 [Apis mellifera] 4.0E-25
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510494.2 1 41-63
C18B12.6 1 41-63
Sequence
Target Sequence 
>C. ELEGANS:173544_AT
cttttttttttgcacttctggtcatttaatacagtttcttagccgcgtttaggaaagttc
caagaaagtgggcgattttcaattttgtgataacaatcatttcccgataacattgtttgt
ctctccaggctgtgttgcaatttcaattgcgatgattccaatattgttcaccttcttttt
tccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTTTTTTTGCACTTCTGGTCAT 698 209 1294 Antisense
TTTGCACTTCTGGTCATTTAATACA 688 665 1302 Antisense
AATACAGTTTCTTAGCCGCGTTTAG 630 169 1321 Antisense
TAGCCGCGTTTAGGAAAGTTCCAAG 270 651 1333 Antisense
GTTCCAAGAAAGTGGGCGATTTTCA 16 439 1350 Antisense
GTGATAACAATCATTTCCCGATAAC 246 485 1380 Antisense
GATAACATTGTTTGTCTCTCCAGGC 298 423 1399 Antisense
TTGTCTCTCCAGGCTGTGTTGCAAT 289 705 1410 Antisense
CCAGGCTGTGTTGCAATTTCAATTG 54 271 1418 Antisense
GCGATGATTCCAATATTGTTCACCT 270 291 1442 Antisense
TATTGTTCACCTTCTTTTTTCCAAT 596 665 1455 Antisense
Sequence Source Affymetrix Proprietary Database