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[173540_at]

Description C62431 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59C12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C62431 /WB_GENE_ID=F59C12.3 /WP=CE04684 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286d2 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 07      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 15      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 294
1 2 3 4 range
A 474.8
(3)
P 		180.4
(-3)
P 		211.4
(-2.4)
P 		378.4
(1)
P 		294
B 397.7
(2)
P 		188.5
(-3)
P 		280.4
(-0.8)
P 		438.5
(3)
P 		250
C 405
(3)
P 		198.2
(-3)
P 		269.1
(-0.9)
P 		328.4
(0.8)
P 		207
avr 425.8
(3) 		189
(-3) 		253.6
(-1.4) 		381.8
(1.9) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 662.6
(3)
P 		459.9
(-0.3)
P 		293.2
(-3)
P 		340.7
(-2.2)
P 		470.5
(-0.1)
P 		302.9
(-2.8)
P 		369
B 545.5
(3)
P 		371.2
(-2.4)
P 		414.2
(-1.1)
P 		468.6
(0.6)
P 		353.3
(-3)
P 		391.8
(-1.8)
P 		192
C 402.2
(0.2)
P 		525.5
(3)
P 		303.1
(-2.1)
P 		444
(1.1)
P 		265.3
(-3)
P 		423.9
(0.7)
P 		260
avr 536.8
(3) 		452.2
(0.5) 		336.8
(-3) 		417.8
(-0.6) 		363
(-2.2) 		372.9
(-1.9) 		200
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 172.9
(3)
P 		39.2
(-3)
P 		55.3
(-2.3)
P 		55.4
(-2.3)
P 		134
B 126.8
(3)
P 		46.6
(-3)
P 		65
(-1.6)
P 		93.5
(0.5)
P 		80
C 134.1
(3)
P 		57
(-2.9)
P 		93.8
(-0.1)
P 		55.4
(-3)
P 		79
avr 144.6
(3) 		47.6
(-3) 		71.4
(-1.5) 		68.1
(-1.7) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 122.1
(0.5)
P 		163.6
(3)
P 		63.8
(-3)
P 		86.4
(-1.6)
P 		142
(1.7)
P 		73.7
(-2.4)
P 		100
B 189.8
(3)
P 		123.5
(-1.5)
P 		100.6
(-3)
P 		124.1
(-1.4)
P 		143.5
(-0.1)
P 		146.1
(0.1)
P 		89
C 149.1
(2.2)
P 		160.4
(3)
P 		77.1
(-3)
P 		89.3
(-2.1)
P 		85.9
(-2.4)
P 		141.9
(1.7)
P 		83
avr 153.7
(3) 		149.2
(2.6) 		80.5
(-3) 		99.9
(-1.4) 		123.8
(0.5) 		120.6
(0.3) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173540_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26057
Sequence Type Exemplar sequence
Representative Public ID C62431 NCBI
Target Description C62431 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F59C12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C62431 /WB_GENE_ID=F59C12.3 /WP=CE04684 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk286d2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078285 NCBI Caenorhabditis elegans F59C12.3 (F59C12.3) mRNA, complete cds. 11/11 None
F59C12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:16603299:16609437:-1 gene:F59C12.3 11/11 None
F59C12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:16603299:16609676:-1 gene:F59C12.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16603342-16609705(-) 98.65 100.0
Public Domain and Genome References
Gene Title
Ensembl F59C12.3
Entrez Gene 181718 Entrez gene
SwissProt Q21036 EMBL-EBI
WormBase CE35728 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27897.1.S1_AT similar to angiomotin cfa
CANINE_2:CFAAFFX.27900.1.S1_S_AT similar to angiomotin cfa
CHICKEN:GGA.11731.1.S1_AT angiomotin gga
CHICKEN:GGAAFFX.22422.1.S1_S_AT angiomotin gga
HG-U95AV2:38286_AT angiomotin hs
HG-U133_PLUS_2:209521_S_AT angiomotin hs
HG-U133A:209521_S_AT angiomotin hs
HG-U133A_2:209521_S_AT angiomotin hs
HU35KSUBB:RC_N29744_AT angiomotin hs
U133_X3P:G9887325_3P_A_AT angiomotin hs
Protein Similarities
Method ID Description E-Value
blast AAK29710 Hypothetical protein F59C12.3 [Caenorhabditis elegans] ref|NP_510686.3| F59C12.3 [Caenorhabditis elegans] 0.0
blast T29879 hypothetical protein F59C12.3 - Caenorhabditis elegans 0.0
blast CAE69983 Hypothetical protein CBG16381 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:173540_AT
accaattttcttgaatattcctcatgcactagtcatcgaaattctatttattatttacaa
acacgctaccaacaacacactttccttctttgttactttctgttacatgcataattcaat
ttatttttcaattcaagtttccaaagtccattcctcttaatacaatttgtatgtagtttt
gttcttttaatttttagccagtttagatgatgtacttgtattttttccatcagcttcata
agctcattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAATTTTCTTGAATATTCCTCAT 706 83 1803 Antisense
TATTCCTCATGCACTAGTCATCGAA 442 663 1818 Antisense
TTTACAAACACGCTACCAACAACAC 266 607 1856 Antisense
CCAACAACACACTTTCCTTCTTTGT 438 275 1871 Antisense
TCCTTCTTTGTTACTTTCTGTTACA 550 591 1885 Antisense
GTTACTTTCTGTTACATGCATAATT 227 447 1894 Antisense
CAAGTTTCCAAAGTCCATTCCTCTT 251 183 1936 Antisense
GTCCATTCCTCTTAATACAATTTGT 474 477 1948 Antisense
TGTATGTAGTTTTGTTCTTTTAATT 295 561 1970 Antisense
TACTTGTATTTTTTCCATCAGCTTC 450 645 2015 Antisense
TCCATCAGCTTCATAAGCTCATTCA 395 591 2028 Antisense
Sequence Source Affymetrix Proprietary Database