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[173537_at]

Description C40360 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0361.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40360 /WB_GENE_ID=B0361.9 /WP=CE00838 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk197g9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 74      6grp_total > 82      4grp_total > 04      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 588
1 2 3 4 range
A 355.1
(-1.9)
P 		275.8
(-3)
P 		282.9
(-2.9)
P 		728.6
(3)
P 		453
B 489.1
(0.2)
P 		320.8
(-1.6)
P 		179.7
(-3)
P 		768
(3)
P 		588
C 363.9
(-1.9)
P 		284.3
(-3)
P 		285.4
(-3)
P 		701.5
(3)
P 		417
avr 402.7
(-1.1) 		293.6
(-2.5) 		249.3
(-3) 		732.7
(3) 		483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 686.6
(-0.1)
P 		713.3
(0.4)
P 		860
(3)
P 		681.8
(-0.2)
P 		751.5
(1.1)
P 		523.2
(-3)
P 		337
B 595.6
(-1.3)
P 		788.1
(2.3)
P 		507.8
(-3)
P 		824.2
(3)
P 		723.1
(1.1)
P 		618.8
(-0.9)
P 		316
C 576.5
(-2.1)
P 		796.8
(3)
P 		684.1
(0.4)
P 		664.1
(-0.1)
P 		706.6
(0.9)
P 		538.8
(-3)
P 		258
avr 619.6
(-1.3) 		766.1
(3) 		684
(0.6) 		723.4
(1.8) 		727.1
(1.9) 		560.3
(-3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 129.3
(3)
P 		59.9
(-3)
P 		73.9
(-1.8)
P 		106.7
(1)
P 		69
B 156
(2.6)
P 		79.2
(-1.2)
P 		41.6
(-3)
P 		163.7
(3)
P 		122
C 120.5
(3)
P 		81.7
(-3)
P 		99.5
(-0.2)
P 		118.3
(2.7)
P 		39
avr 135.3
(3) 		73.6
(-2.8) 		71.7
(-3) 		129.6
(2.5) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 126.6
(-3)
P 		253.7
(3)
P 		187.3
(-0.1)
P 		172.9
(-0.8)
P 		226.8
(1.7)
P 		127.4
(-3)
P 		127
B 207.2
(-0)
P 		262.3
(1.9)
P 		123.3
(-3)
P 		218.3
(0.3)
P 		293.8
(3)
P 		230.8
(0.8)
P 		171
C 213.7
(1.4)
P 		243.1
(3)
P 		174.1
(-0.8)
P 		133.5
(-3)
P 		228.6
(2.2)
P 		180.4
(-0.4)
P 		110
avr 182.5
(-1.6) 		253
(3) 		161.6
(-3) 		174.9
(-2.1) 		249.7
(2.8) 		179.5
(-1.8) 		91
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24369
Sequence Type Exemplar sequence
Representative Public ID C40360 NCBI
Target Description C40360 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=B0361.9 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40360 /WB_GENE_ID=B0361.9 /WP=CE00838 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk197g9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066207(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066207 NCBI Caenorhabditis elegans B0361.9 (B0361.9) mRNA, complete cds. 11/11 None
B0361.9 ENSEMBL cdna:known chromosome:CEL140:III:7298289:7299522:-1 gene:B0361.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7298302-7299401(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0361.9
Entrez Gene 176033 Entrez gene
SwissProt Q10952 EMBL-EBI
WormBase CE00838 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18868 Hypothetical protein B0361.9 [Caenorhabditis elegans] ref|NP_498608.1| B0361.9 [Caenorhabditis elegans] sp|Q10952|YMP9_CAEEL Hypothetical protein B0361.9 in chromosome III precursor 6.0E-80
blast CAE69295 Hypothetical protein CBG15350 [Caenorhabditis briggsae] 4.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 2.8E-21
Sequence
Target Sequence 
>C. ELEGANS:173537_AT
tcgctaattccttcttccaggagttattcggtatttcgtttatcttgtctgtaccataca
atttaatcattcttgaaaatccataatatttttcttattttttttctcatttttccctgc
tcttgctacatgtccctcagcgatctcttctccttctcatgtaatttcgggttcttcaaa
atgcttccagttgtttttgttcccgattccaaaattctagaactttcctagtcaaaagtg
tagatccttctcttcatgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTAATTCCTTCTTCCAGGAGTT 214 601 592 Antisense
TTCCAGGAGTTATTCGGTATTTCGT 586 693 606 Antisense
TCGGTATTTCGTTTATCTTGTCTGT 170 607 619 Antisense
TTCGTTTATCTTGTCTGTACCATAC 128 697 626 Antisense
TGTACCATACAATTTAATCATTCTT 99 561 641 Antisense
CTTCTCCTTCTCATGTAATTTCGGG 325 221 738 Antisense
CTTCTCATGTAATTTCGGGTTCTTC 125 221 744 Antisense
TTCCCGATTCCAAAATTCTAGAACT 505 697 791 Antisense
ATTCTAGAACTTTCCTAGTCAAAAG 174 9 805 Antisense
GTCAAAAGTGTAGATCCTTCTCTTC 473 463 822 Antisense
AAGTGTAGATCCTTCTCTTCATGTT 515 159 827 Antisense
Sequence Source Affymetrix Proprietary Database