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[173536_s_at]

Description C47708 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K02B2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47708 /WB_GENE_ID=K02B2.3 /WP=CE27192 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk449h12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 97      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 88      6grp_total > 96      4grp_total > 52      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1000
1 2 3 4 range
A 1392
(3)
P 		1328.8
(2.6)
P 		1063.5
(0.8)
P 		477.7
(-3)
P 		914
B 684.2
(-0.7)
P 		1158.1
(3)
P 		835
(0.5)
P 		391.6
(-3)
P 		767
C 1243.9
(2.5)
P 		1194.5
(2.1)
P 		1317.9
(3)
P 		505.5
(-3)
P 		812
avr 1106.7
(2.1) 		1227.1
(3) 		1072.1
(1.8) 		458.3
(-3) 		769

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1173
1 2 3 4 5 6 range
A 1047.1
(-3)
P 		1363.4
(1)
P 		1105.7
(-2.3)
P 		1181.3
(-1.3)
P 		1456.7
(2.2)
P 		1522
(3)
P 		475
B 953.9
(-1.6)
P 		1056.1
(-1)
P 		701.9
(-3)
P 		1401.7
(1)
P 		1618.2
(2.2)
P 		1756.7
(3)
P 		1055
C 1244.5
(-2.8)
P 		1307.2
(-2.2)
P 		1218.3
(-3)
P 		1415.5
(-1.2)
P 		1599
(0.5)
P 		1875.1
(3)
P 		657
avr 1081.8
(-2.4) 		1242.2
(-1) 		1008.6
(-3) 		1332.8
(-0.3) 		1558
(1.6) 		1717.9
(3) 		709
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 437
1 2 3 4 range
A 506.8
(3)
P 		288.5
(0)
P 		278
(-0.1)
P 		69.9
(-3)
P 		437
B 218.2
(1)
P 		286
(3)
P 		193.5
(0.3)
P 		83.5
(-3)
P 		203
C 411.8
(2.2)
P 		343.4
(1.1)
P 		459.3
(3)
P 		85.2
(-3)
P 		374
avr 378.9
(3) 		306
(1.5) 		310.3
(1.6) 		79.5
(-3) 		299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 487
1 2 3 4 5 6 range
A 193
(-3)
P 		484.9
(3)
P 		240.8
(-2)
P 		299.6
(-0.8)
P 		439.6
(2.1)
P 		370.6
(0.7)
P 		292
B 331.9
(-1)
P 		351.5
(-0.8)
P 		170.4
(-3)
P 		371.3
(-0.5)
P 		657.5
(3)
P 		655.1
(3)
P 		487
C 461.3
(0.1)
P 		398.9
(-1)
P 		310.1
(-2.6)
P 		284.7
(-3)
P 		517.4
(1.1)
P 		627.7
(3)
P 		343
avr 328.7
(-1.3) 		411.8
(0.3) 		240.4
(-3) 		318.5
(-1.5) 		538.2
(2.8) 		551.1
(3) 		311
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173536_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25063
Sequence Type Exemplar sequence
Representative Public ID C47708 NCBI
Target Description C47708 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K02B2.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C47708 /WB_GENE_ID=K02B2.3 /WP=CE27192 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk449h12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068491 NCBI Caenorhabditis elegans K02B2.3 (K02B2.3) mRNA, complete cds. 11/11 None
SNAP00000017499 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5937654:5939197:-1 11/11 None
GENEFINDER00000017505 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5937654:5939197:-1 11/11 None
K02B2.3 ENSEMBL cdna:known chromosome:CEL140:IV:5937441:5939216:-1 gene:K02B2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5937505-5938743(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02B2.3
Entrez Gene 177362 Entrez gene
SwissProt Q21121 EMBL-EBI
WormBase CE27192 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.21169.1.S1_S_AT similar to CG18769-PB, isoform B cfa
CANINE_2:CFAAFFX.22388.1.S1_S_AT similar to CG18769-PB, isoform B cfa
CANINE_2:CFAAFFX.22389.1.S1_AT similar to CG18769-PB, isoform B cfa
DROSOPHILA_2:1633715_S_AT dm
DROSGENOME1:154361_AT dm
CHICKEN:GGAAFFX.2714.1.S1_AT similar to chromosome 10 open reading frame 42 gga
CHICKEN:GGAAFFX.2714.2.S1_S_AT similar to chromosome 10 open reading frame 42 gga
HG-U133B:225320_AT chromosome 10 open reading frame 42 hs
HG-U133_PLUS_2:225320_AT chromosome 10 open reading frame 42 hs
HU35KSUBB:RC_R80863_S_AT chromosome 10 open reading frame 42 hs
U133_X3P:HS.4896.0.A1_3P_AT chromosome 10 open reading frame 42 hs
HG-U95B:52971_AT chromosome 10 open reading frame 42 hs
HG-U95C:62911_AT chromosome 10 open reading frame 42 hs
HG-U133_PLUS_2:243335_AT Chromosome 10 open reading frame 42 hs
HG-U133B:243335_AT Chromosome 10 open reading frame 42 hs
HG-U95E:67323_AT Chromosome 10 open reading frame 42 hs
MOE430B:1453166_AT RIKEN cDNA D130073L02 gene mm
MOUSE430_2:1453166_AT RIKEN cDNA D130073L02 gene mm
MG-U74BV2:117121_AT RIKEN cDNA D130073L02 gene mm
MG-U74CV2:139494_AT RIKEN cDNA D130073L02 gene mm
MG-U74BV2:163883_AT RIKEN cDNA D130073L02 gene mm
MG-U74CV2:165629_AT RIKEN cDNA D130073L02 gene mm
MG-U74CV2:170895_R_AT RIKEN cDNA D130073L02 gene mm
MOE430B:1442031_AT RIKEN cDNA D130073L02 gene mm
MOUSE430_2:1442031_AT RIKEN cDNA D130073L02 gene mm
RAE230B:1377981_AT Similar to chromosome 10 open reading frame 42 rn
RAT230_2:1377981_AT Similar to chromosome 10 open reading frame 42 rn
Protein Similarities
Method ID Description E-Value
blast AAK39248 Hypothetical protein K02B2.3 [Caenorhabditis elegans] ref|NP_500892.1| K02B2.3 [Caenorhabditis elegans] 1.0E-174
blast CAE64684 Hypothetical protein CBG09462 [Caenorhabditis briggsae] 1.0E-162
blast XP_426497 PREDICTED: similar to chromosome 10 open reading frame 42 [Gallus gallus] 3.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR006769 EMBL-EBI Protein of unknown function DUF607 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173536_S_AT
tggagaacgccgaaacgcttctcgcaccattgcatgatgcgaaacggaagatcgaacaag
agtgtgaagctcacacggatcgagtcatgtgggcaggatttgcagcgatgggagtgcaaa
ctggtctattcgcacggttgacctggtgggagtattcttgggatatcatggaaccggtca
catattttgccacgtattcgactgtttgtgcgactttcggatactatttatatacccaac
agagtttcgaatatccatctgctcgggaacgtgtctacactaaacaattctaccgtcgag
ctcaaaagcaaaactttgacattgaaaaatacaatcgcctcgtcactgaagtagacgaac
tacggaatcagctgaaacgaatgcgtgatccactattccagcatcttcccgttagctatt
tatccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGAACGCCGAAACGCTTCTCGC 604 547 342 Antisense
GCTTCTCGCACCATTGCATGATGCG 291 305 358 Antisense
TGCAAACTGGTCTATTCGCACGGTT 86 575 456 Antisense
TTCGCACGGTTGACCTGGTGGGAGT 643 689 470 Antisense
AACCGGTCACATATTTTGCCACGTA 11 147 513 Antisense
GTTTCGAATATCCATCTGCTCGGGA 502 449 585 Antisense
TCTGCTCGGGAACGTGTCTACACTA 307 609 599 Antisense
CTAAACAATTCTACCGTCGAGCTCA 195 227 621 Antisense
TACAATCGCCTCGTCACTGAAGTAG 639 641 671 Antisense
ATGCGTGATCCACTATTCCAGCATC 66 43 722 Antisense
TCTTCCCGTTAGCTATTTATCCAAT 90 617 745 Antisense
Sequence Source Affymetrix Proprietary Database