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[173534_at]

Description C43280 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C08A9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43280 /WB_GENE_ID=C08A9.7 /WP=CE06789 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk340a12 : 5prime end, single read.
Cluster 6grp_total > 28      4grp_total > 07      6grp_cgc > 05      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 13.1
(3)
A 		9.3
(0.7)
A 		3.3
(-3)
A 		5.7
(-1.5)
A 		10
B 15.2
(-1.2)
A 		10.1
(-3)
A 		26.9
(3)
A 		16.9
(-0.6)
A 		17
C 12.5
(1.7)
A 		1.5
(-2.7)
A 		0.7
(-3)
A 		15.7
(3)
A 		15
avr 13.6
(3) 		7
(-3) 		10.3
(0) 		12.8
(2.3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 31.3
(3)
A 		18.3
(0.4)
A 		17.9
(0.3)
A 		1.5
(-3)
A 		3.5
(-2.6)
A 		4
(-2.5)
A 		30
B 34.2
(3)
A 		19.2
(0.2)
A 		3.9
(-2.6)
A 		2
(-3)
A 		24
(1.1)
A 		30.2
(2.3)
A 		32
C 22.5
(3)
A 		15.1
(0.5)
A 		16.4
(1)
A 		4.4
(-3)
A 		11.4
(-0.7)
A 		22.2
(2.9)
A 		18
avr 29.3
(3) 		17.5
(0.3) 		12.7
(-0.7) 		2.6
(-3) 		13
(-0.7) 		18.8
(0.6) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 4.8
(3)
A 		2
(-1.2)
A 		0.9
(-2.9)
A 		0.8
(-3)
A 		4
B 4.8
(0.7)
A 		2.5
(-3)
A 		6.2
(3)
A 		3.6
(-1.2)
A 		4
C 4.1
(3)
A 		0.4
(-2.7)
A 		0.2
(-3)
A 		2.7
(0.8)
A 		4
avr 4.6
(3) 		1.6
(-3) 		2.4
(-1.4) 		2.4
(-1.4) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.8
(2.3)
A 		6.5
(3)
A 		3.9
(0.4)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		1
(-2.4)
A 		6
B 11.9
(3)
A 		6.4
(0.1)
A 		1
(-2.7)
A 		0.5
(-3)
A 		9.7
(1.8)
A 		11.3
(2.7)
A 		11
C 8.3
(3)
A 		4.6
(-0)
A 		4.2
(-0.3)
A 		0.9
(-3)
A 		3.7
(-0.7)
A 		7.4
(2.3)
A 		7
avr 8.7
(3) 		5.8
(0.9) 		3
(-1.2) 		0.6
(-3) 		4.8
(0.1) 		6.6
(1.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26102
Sequence Type Exemplar sequence
Representative Public ID C43280 NCBI
Target Description C43280 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C08A9.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43280 /WB_GENE_ID=C08A9.7 /WP=CE06789 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk340a12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078365 NCBI Caenorhabditis elegans C08A9.7 (C08A9.7) mRNA, complete cds. 11/11 None
C08A9.7 ENSEMBL cdna:known chromosome:CEL140:X:17099024:17100664:-1 gene:C08A9.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17099034-17100653(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-2
Ensembl C08A9.7
Entrez Gene 181750 Entrez gene
SwissProt Q17810 EMBL-EBI
WormBase CE06789 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53819 Hypothetical protein C08A9.7 [Caenorhabditis elegans] ref|NP_510766.1| C08A9.7 [Caenorhabditis elegans] 1.0E-177
blast AAB70932 Hypothetical protein C41H7.4 [Caenorhabditis elegans] ref|NP_494422.1| C41H7.4 [Caenorhabditis elegans] 2.0E-55
blast AAB53814 Hypothetical protein C08A9.6 [Caenorhabditis elegans] ref|NP_510765.1| C08A9.6 [Caenorhabditis elegans] 2.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR005020 EMBL-EBI Protein of unknown function DUF278 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173534_AT
aatggaatgaattcttgccgccctgttgaattttcatcaaatgttctacgaatctcatgc
tcagttcttatcatgtgcttttcttcttgaactgttcttccagtacttttttgtttcaat
gatatttattttttcagtgcatttcttattgcatttcacgtaaaaacgcagaaagatcga
aacttagtaaatttgcaatcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGAATGAATTCTTGCCGCCCTG 203 163 1010 Antisense
GAATTTTCATCAAATGTTCTACGAA 437 325 1037 Antisense
TGTTCTACGAATCTCATGCTCAGTT 321 561 1051 Antisense
ACGAATCTCATGCTCAGTTCTTATC 63 93 1057 Antisense
AGTTCTTATCATGTGCTTTTCTTCT 164 65 1072 Antisense
GCTTTTCTTCTTGAACTGTTCTTCC 400 303 1086 Antisense
TTGAACTGTTCTTCCAGTACTTTTT 160 705 1096 Antisense
GATATTTATTTTTTCAGTGCATTTC 420 427 1130 Antisense
GTGCATTTCTTATTGCATTTCACGT 42 481 1146 Antisense
ATTGCATTTCACGTAAAAACGCAGA 581 5 1157 Antisense
CGAAACTTAGTAAATTTGCAATCAG 137 251 1187 Antisense
Sequence Source Affymetrix Proprietary Database