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[173531_at]

Description C43117 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G1.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43117 /WB_GENE_ID=C17G1.4 /WP=CE08283 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325f11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 29      4grp_highest_8_8 > 39      4grp_high_8_8 > 04      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 605
1 2 3 4 range
A 493.7
(-1.6)
P 		416.3
(-3)
P 		452.1
(-2.4)
P 		753.1
(3)
P 		337
B 639.8
(0.2)
P 		467
(-1.6)
P 		326.2
(-3)
P 		922.1
(3)
P 		596
C 653.9
(-0.5)
P 		459.4
(-3)
P 		478.5
(-2.8)
P 		931.3
(3)
P 		472
avr 595.8
(-0.6) 		447.6
(-2.6) 		418.9
(-3) 		868.8
(3) 		450

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 719.5
(3)
P 		509.1
(-0.1)
P 		313.5
(-2.9)
P 		308
(-3)
P 		478.4
(-0.5)
P 		403.4
(-1.6)
P 		412
B 771
(3)
P 		591
(0.3)
P 		369.6
(-3)
P 		369.3
(-3)
P 		396.3
(-2.6)
P 		635.4
(1)
P 		402
C 587.2
(1)
P 		706.8
(3)
P 		347.6
(-3)
P 		443.5
(-1.4)
P 		589.6
(1)
P 		408
(-2)
P 		359
avr 692.6
(3) 		602.3
(1.4) 		343.6
(-3) 		373.6
(-2.5) 		488.1
(-0.5) 		482.3
(-0.6) 		349
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 179.8
(3)
P 		90.4
(-3)
P 		118.2
(-1.1)
P 		110.2
(-1.7)
P 		89
B 204
(3)
P 		115.3
(-1.1)
P 		75.6
(-3)
P 		196.5
(2.6)
P 		128
C 216.5
(3)
P 		132.1
(-3)
P 		166.8
(-0.5)
P 		157
(-1.2)
P 		84
avr 200.1
(3) 		112.6
(-3) 		120.2
(-2.5) 		154.6
(-0.1) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 132.6
(0.4)
P 		181.1
(3)
P 		68.3
(-3)
P 		78.1
(-2.5)
P 		144.4
(1)
P 		98.2
(-1.4)
P 		113
B 268.3
(3)
P 		196.7
(0.6)
P 		89.8
(-3)
P 		97.8
(-2.7)
P 		161
(-0.6)
P 		236.9
(1.9)
P 		179
C 217.7
(3)
P 		215.7
(2.9)
P 		88.5
(-3)
P 		89.2
(-3)
P 		190.8
(1.8)
P 		136.6
(-0.8)
P 		129
avr 206.2
(3) 		197.8
(2.6) 		82.2
(-3) 		88.4
(-2.7) 		165.4
(1) 		157.2
(0.6) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173531_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25958
Sequence Type Exemplar sequence
Representative Public ID C43117 NCBI
Target Description C43117 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C17G1.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43117 /WB_GENE_ID=C17G1.4 /WP=CE08283 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk325f11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029241 NCBI Caenorhabditis elegans C17G1.4b (C17G1.4) mRNA, complete cds. 11/11 None
C17G1.4b ENSEMBL cdna:known chromosome:CEL140:X:9925853:9931390:-1 gene:C17G1.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181206 2 1 NM_001029241 173531_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9925877-9931383(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G1.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01670 Hypothetical protein C17G1.4a [Caenorhabditis elegans] ref|NP_001024411.1| C17G1.4a [Caenorhabditis elegans] 0.0
blast CAH60759 Hypothetical protein C17G1.4b [Caenorhabditis elegans] ref|NP_001024412.1| C17G1.4b [Caenorhabditis elegans] 0.0
blast CAE58765 Hypothetical protein CBG01957 [Caenorhabditis briggsae] 1.0E-134
Sequence
Target Sequence 
>C. ELEGANS:173531_AT
ttcaattatatctctgtgagacgcagatgagtttcttcaaactccaacaactcatttatt
gccatttgtcaaatgaacaaatgaacttaaacctacaaaacttatcatctgaattatctc
gtcccatacttttgatccaccaattgtcatctcacatccacttgtctcatcattcatagg
ttattatttgctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAATTATATCTCTGTGAGACGCA 156 685 2841 Antisense
GTGAGACGCAGATGAGTTTCTTCAA 563 481 2856 Antisense
TGAGTTTCTTCAAACTCCAACAACT 214 567 2868 Antisense
CAACTCATTTATTGCCATTTGTCAA 162 189 2888 Antisense
TGAACAAATGAACTTAAACCTACAA 131 571 2914 Antisense
TATCATCTGAATTATCTCGTCCCAT 590 659 2943 Antisense
ATTATCTCGTCCCATACTTTTGATC 638 13 2953 Antisense
TCCCATACTTTTGATCCACCAATTG 484 597 2962 Antisense
TGATCCACCAATTGTCATCTCACAT 139 567 2973 Antisense
CATCCACTTGTCTCATCATTCATAG 269 211 2995 Antisense
TCATTCATAGGTTATTATTTGCTCA 672 617 3010 Antisense
Sequence Source Affymetrix Proprietary Database