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[173530_at]

Description C40730 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F26F4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40730 /WB_GENE_ID=F26F4.5 /WP=CE01262 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247h11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 54      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 302
(3)
P 		262.4
(-3)
P 		272.3
(-1.5)
P 		262.5
(-3)
P 		40
B 301.3
(3)
P 		268.1
(-1.1)
P 		261.1
(-2)
P 		252.6
(-3)
P 		49
C 299.1
(3)
P 		288.7
(2.4)
P 		225.2
(-1)
P 		187.1
(-3)
P 		112
avr 300.8
(3) 		273.1
(0.5) 		252.9
(-1.3) 		234.1
(-3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 256.5
(-2.8)
P 		247.7
(-3)
P 		287.8
(-2.1)
P 		280
(-2.3)
P 		436.9
(1)
P 		529.4
(3)
P 		282
B 292.5
(-2.6)
P 		307.3
(-2.4)
P 		271.3
(-3)
P 		347
(-1.7)
P 		399.2
(-0.8)
P 		620.3
(3)
P 		349
C 255.4
(-3)
P 		293.3
(-2.3)
P 		261.3
(-2.9)
P 		335.1
(-1.5)
P 		372.4
(-0.8)
P 		573.9
(3)
P 		319
avr 268.1
(-3) 		282.8
(-2.7) 		273.5
(-2.9) 		320.7
(-2) 		402.8
(-0.4) 		574.5
(3) 		306
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 110
(3)
P 		57
(-1.4)
P 		71.2
(-0.3)
P 		38.4
(-3)
P 		72
B 96.1
(3)
P 		66.2
(-1.2)
P 		60.5
(-2)
P 		53.8
(-3)
P 		42
C 99
(3)
P 		83
(1.6)
P 		78.5
(1.2)
P 		31.6
(-3)
P 		67
avr 101.7
(3) 		68.7
(-0.3) 		70.1
(-0.1) 		41.3
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 47.3
(-3)
P 		88.1
(-0.1)
P 		62.7
(-1.9)
P 		71
(-1.3)
P 		131.8
(3)
P 		128.9
(2.8)
P 		85
B 101.8
(-1.7)
P 		102.3
(-1.7)
P 		65.9
(-3)
P 		91.9
(-2.1)
P 		162.2
(0.5)
P 		231.3
(3)
P 		165
C 94.6
(-1.7)
P 		89.5
(-1.9)
P 		66.5
(-3)
P 		67.4
(-3)
P 		120.5
(-0.4)
P 		192.1
(3)
P 		126
avr 81.2
(-2.2) 		93.3
(-1.6) 		65
(-3) 		76.8
(-2.4) 		138.2
(0.7) 		184.1
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173530_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23978
Sequence Type Exemplar sequence
Representative Public ID C40730 NCBI
Target Description C40730 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F26F4.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C40730 /WB_GENE_ID=F26F4.5 /WP=CE01262 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk247h11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065623(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065623 NCBI Caenorhabditis elegans F26F4.5 (F26F4.5) mRNA, complete cds. 11/11 None
F26F4.5.1 ENSEMBL cdna:known chromosome:CEL140:III:4887882:4890912:-1 gene:F26F4.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4887960-4892229(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F4.5
Entrez Gene 175653 Entrez gene
SwissProt Q19816 EMBL-EBI
WormBase CE29289 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL02497 Hypothetical protein F26F4.5 [Caenorhabditis elegans] ref|NP_498024.1| F26F4.5 [Caenorhabditis elegans] 0.0
blast T16167 hypothetical protein F26F4.5 - Caenorhabditis elegans 0.0
blast CAE71095 Hypothetical protein CBG17945 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 6.4E-14
Sequence
Target Sequence 
>C. ELEGANS:173530_AT
aaataatatcaagcattccccagttaatcaattccatgatattttctttcccatttcaat
tctctcatatttgttccataattcccgagaagcacatttcagtgattatttctcattgcc
aattttcctatgatctttgctttcagaaccgatgatccttacccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATAATATCAAGCATTCCCCAGTT 283 117 1880 Antisense
GCATTCCCCAGTTAATCAATTCCAT 565 307 1892 Antisense
ATTTCAATTCTCTCATATTTGTTCC 703 15 1932 Antisense
ATTTGTTCCATAATTCCCGAGAAGC 126 17 1948 Antisense
GTTCCATAATTCCCGAGAAGCACAT 22 441 1952 Antisense
GAAGCACATTTCAGTGATTATTTCT 533 341 1968 Antisense
AGTGATTATTTCTCATTGCCAATTT 56 61 1980 Antisense
CATTGCCAATTTTCCTATGATCTTT 528 217 1993 Antisense
ATTTTCCTATGATCTTTGCTTTCAG 663 13 2001 Antisense
TGATCTTTGCTTTCAGAACCGATGA 202 565 2010 Antisense
TTTCAGAACCGATGATCCTTACCCC 67 669 2020 Antisense
Sequence Source Affymetrix Proprietary Database