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[173529_at]

Description C43811 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36A4.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43811 /WB_GENE_ID=C36A4.4 /WP=CE27831 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk333h10 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 89      6grp_high1_10_10 > 98      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 89      6grp_total > 95      4grp_total > 56      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 846
1 2 3 4 range
A 644.8
(-1.8)
P 		939.6
(0.4)
P 		1284.7
(3)
P 		485.9
(-3)
P 		799
B 438.6
(-3)
P 		878.2
(1.8)
P 		989.4
(3)
P 		512.5
(-2.2)
P 		551
C 536.6
(-3)
P 		850.5
(-0.4)
P 		1255.2
(3)
P 		607.2
(-2.4)
P 		719
avr 540
(-3) 		889.4
(0.3) 		1176.4
(3) 		535.2
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2076
1 2 3 4 5 6 range
A 654.5
(-3)
P 		773.7
(-2.5)
P 		696.2
(-2.8)
P 		1553.5
(0.4)
P 		2240.3
(3)
P 		1896.2
(1.7)
P 		1586
B 536.1
(-3)
P 		947.1
(-1.8)
P 		691
(-2.6)
P 		1577
(0)
P 		1780.8
(0.6)
P 		2611.6
(3)
P 		2076
C 540.4
(-3)
P 		929.1
(-1)
P 		936.8
(-1)
P 		1536.8
(2)
P 		1675.7
(2.7)
P 		1736
(3)
P 		1196
avr 577
(-3) 		883.3
(-1.8) 		774.7
(-2.2) 		1555.8
(0.9) 		1898.9
(2.3) 		2081.3
(3) 		1504
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 366
1 2 3 4 range
A 234.8
(0.7)
P 		204
(0)
P 		335.9
(3)
P 		71.1
(-3)
P 		265
B 139.9
(-1.5)
P 		216.9
(2.4)
P 		229.3
(3)
P 		109.2
(-3)
P 		120
C 177.6
(-1.7)
P 		244.5
(-0.5)
P 		437.5
(3)
P 		102.4
(-3)
P 		335
avr 184.1
(-0.8) 		221.8
(0.2) 		334.2
(3) 		94.2
(-3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 853
1 2 3 4 5 6 range
A 120.7
(-3)
P 		275.2
(-1.3)
P 		151.6
(-2.7)
P 		394
(-0)
P 		676
(3)
P 		461.7
(0.7)
P 		555
B 186.5
(-2.9)
P 		315.3
(-1.9)
P 		167.8
(-3)
P 		417.7
(-1.1)
P 		723.5
(1.1)
P 		973.8
(3)
P 		806
C 200.3
(-3)
P 		283.5
(-1.7)
P 		238.4
(-2.4)
P 		309
(-1.3)
P 		542.2
(2.4)
P 		581.1
(3)
P 		381
avr 169.2
(-3) 		291.3
(-1.5) 		185.9
(-2.8) 		373.6
(-0.6) 		647.2
(2.7) 		672.2
(3) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24187
Sequence Type Exemplar sequence
Representative Public ID C43811 NCBI
Target Description C43811 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36A4.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43811 /WB_GENE_ID=C36A4.4 /WP=CE27831 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk333h10 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065376(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065376 NCBI Caenorhabditis elegans C36A4.4 (C36A4.4) mRNA, complete cds. 11/11 None
C36A4.4.1 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843593:-1 gene:C36A4.4 11/11 None
C36A4.4.2 ENSEMBL cdna:known chromosome:CEL140:III:3841239:3843591:-1 gene:C36A4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4188024-4196051(+) 95.77 95.77
chrIII:3841310-3844422(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36A4.4
Entrez Gene 175497 Entrez gene
SwissProt Q18493 EMBL-EBI
WormBase CE27831 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16779 nucleotidyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91270 Hypothetical protein C36A4.4 [Caenorhabditis elegans] ref|NP_497777.1| C36A4.4 [Caenorhabditis elegans] sp|Q18493|UAP1_CAEEL Probable UDP-N-acetylglucosamine pyrophosphorylase 0.0
blast T19764 hypothetical protein C36A4.4 - Caenorhabditis elegans 0.0
blast CAE58357 Hypothetical protein CBG01478 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002618 EMBL-EBI UTP--glucose-1-phosphate uridylyltransferase 1.2E-23
Sequence
Target Sequence 
>C. ELEGANS:173529_AT
ttctttgttgtctagtcttcttttgtttcatatttatactgattgccctactcattcccc
tatcatttcccagccaactgtgttttatttatgttaaaatccccgtgatgctttcaaatt
tccttcggtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTGTTGTCTAGTCTTCTTTTG 141 691 1613 Antisense
TGTTGTCTAGTCTTCTTTTGTTTCA 303 563 1618 Antisense
GTTTCATATTTATACTGATTGCCCT 134 449 1637 Antisense
TTATACTGATTGCCCTACTCATTCC 369 679 1646 Antisense
CTATCATTTCCCAGCCAACTGTGTT 229 225 1672 Antisense
ATTTCCCAGCCAACTGTGTTTTATT 416 17 1677 Antisense
CAGCCAACTGTGTTTTATTTATGTT 407 203 1683 Antisense
ATGTTAAAATCCCCGTGATGCTTTC 162 41 1703 Antisense
AAAATCCCCGTGATGCTTTCAAATT 442 133 1708 Antisense
GATGCTTTCAAATTTCCTTCGGTAT 75 397 1719 Antisense
TGCTTTCAAATTTCCTTCGGTATTT 37 573 1721 Antisense
Sequence Source Affymetrix Proprietary Database