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[173526_at]

Description C68165 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68165 /WB_GENE_ID=F13H6.5 /WP=CE09377 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280c11 : 5prime end, single read.
Cluster 6grp_total > 94      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 39.8
(-0.4)
A 		22.7
(-1.6)
A 		4.1
(-3)
A 		86.1
(3)
P 		82
B 7.8
(-2.9)
A 		12.7
(-2.6)
A 		5.5
(-3)
A 		111.6
(3)
P 		106
C 54.4
(-0.8)
A 		6
(-2.9)
A 		4
(-3)
A 		142.1
(3)
P 		138
avr 34
(-1.4) 		13.8
(-2.5) 		4.5
(-3) 		113.3
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 6.1
(-3)
A 		5.8
(-3)
A 		5.7
(-3)
A 		6.2
(-3)
A 		153.7
(3)
A 		49
(-1.2)
A 		148
B 53.4
(2.4)
A 		36.9
(0.1)
A 		28.3
(-1)
A 		13.6
(-3)
A 		33.3
(-0.3)
A 		58.1
(3)
A 		45
C 5.1
(-3)
A 		18.5
(-2)
A 		22
(-1.8)
A 		89.5
(3)
A 		87.7
(2.9)
A 		43.5
(-0.3)
A 		84
avr 21.5
(-2.8) 		20.4
(-2.9) 		18.7
(-3) 		36.4
(-1.5) 		91.6
(3) 		50.2
(-0.4) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 14.5
(3)
A 		4.9
(-1.3)
A 		1.1
(-3)
A 		12.6
(2.1)
P 		13
B 2.5
(-2.7)
A 		3.1
(-2.5)
A 		1.3
(-3)
A 		23.8
(3)
P 		23
C 18
(1.4)
A 		1.7
(-2.9)
A 		1.4
(-3)
A 		24
(3)
P 		23
avr 11.7
(0.3) 		3.2
(-2.4) 		1.3
(-3) 		20.1
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 1.1
(-3)
A 		2.1
(-2.9)
A 		1.2
(-3)
A 		1.6
(-2.9)
A 		46.4
(3)
A 		11.9
(-1.6)
A 		45
B 18.6
(2)
A 		12.3
(-0.1)
A 		6.9
(-1.9)
A 		3.6
(-3)
A 		13.5
(0.3)
A 		21.7
(3)
A 		18
C 1.9
(-3)
A 		5.7
(-2.1)
A 		5.6
(-2.2)
A 		18
(0.6)
A 		28.4
(3)
A 		14.6
(-0.1)
A 		27
avr 7.2
(-2.4) 		6.7
(-2.5) 		4.6
(-3) 		7.7
(-2.3) 		29.4
(3) 		16.1
(-0.2) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173526_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25210
Sequence Type Exemplar sequence
Representative Public ID C68165 NCBI
Target Description C68165 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F13H6.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68165 /WB_GENE_ID=F13H6.5 /WP=CE09377 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk280c11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072222 NCBI Caenorhabditis elegans F13H6.5 (F13H6.5) mRNA, complete cds. 11/11 None
F13H6.5 ENSEMBL cdna:known chromosome:CEL140:V:6374706:6377527:-1 gene:F13H6.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6374716-6377528(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F13H6.5
Entrez Gene 179021 Entrez gene
SwissProt O16353 EMBL-EBI
WormBase CE09377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65886 Hypothetical protein F13H6.5 [Caenorhabditis elegans] ref|NP_504623.1| F13H6.5 [Caenorhabditis elegans] 0.0
blast CAE71870 Hypothetical protein CBG18923 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504623.1 6 72-94,157-179,188-210,256-278,298-320,335-357
F13H6.5 6 72-94,157-179,188-210,256-278,298-320,335-357
Sequence
Target Sequence 
>C. ELEGANS:173526_AT
ccctctaatgtttaaccatgttctctatttgaaaaatccggttgcttgattttatttagc
ttgcatttttttttaatatctgacttttacatttgtattcttctcaacacgggcctaaac
ggtttctaaaaatttatttcctttttttcccctttttattgttttagttttcccctgcgt
gtttctatagaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTCTAATGTTTAACCATGTTCTC 423 259 1250 Antisense
GTTTAACCATGTTCTCTATTTGAAA 707 449 1259 Antisense
CTATTTGAAAAATCCGGTTGCTTGA 428 223 1274 Antisense
ATCCGGTTGCTTGATTTTATTTAGC 233 39 1285 Antisense
GATTTTATTTAGCTTGCATTTTTTT 132 429 1297 Antisense
GCATTTTTTTTTAATATCTGACTTT 151 309 1312 Antisense
ATATCTGACTTTTACATTTGTATTC 222 21 1325 Antisense
ATTCTTCTCAACACGGGCCTAAACG 483 9 1346 Antisense
TCTTCTCAACACGGGCCTAAACGGT 148 561 1348 Antisense
TTTCCCCTGCGTGTTTCTATAGAAT 658 669 1418 Antisense
TCCCCTGCGTGTTTCTATAGAATTT 419 597 1420 Antisense
Sequence Source Affymetrix Proprietary Database