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[173525_at]

Description CEC1745 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B7.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C13174 /WB_GENE_ID=C36B7.6 /WP=CE04177 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165a8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 29      4grp_highest_8_8 > 19      4grp_high_8_8 > 39      6grp_highest_nonorm > 41      6grp_total > 16      4grp_total > 40      6grp_highest_sub > 01_02      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 549
1 2 3 4 range
A 793.2
(-1.6)
P 		896.4
(-0.2)
P 		1113.8
(3)
P 		699.9
(-3)
P 		414
B 914.9
(-2.1)
P 		871.5
(-3)
P 		1146.8
(3)
P 		1113.8
(2.3)
P 		275
C 878.5
(-3)
P 		970.2
(-1.5)
P 		1249.1
(3)
P 		1133.9
(1.1)
P 		371
avr 862.2
(-3) 		912.7
(-2) 		1169.9
(3) 		982.5
(-0.7) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 957.8
(3)
P 		702.5
(-0.4)
P 		509
(-2.9)
P 		503.8
(-3)
P 		803.5
(1)
P 		618.2
(-1.5)
P 		454
B 993.3
(2.5)
P 		1020
(3)
P 		664.2
(-3)
P 		771
(-1.2)
P 		694.7
(-2.5)
P 		753.2
(-1.5)
P 		356
C 863.1
(2)
P 		938.2
(3)
P 		628.1
(-1.2)
P 		499.2
(-3)
P 		666.1
(-0.7)
P 		640.2
(-1.1)
P 		439
avr 938.1
(3) 		886.9
(2.1) 		600.4
(-2.8) 		591.3
(-3) 		721.4
(-0.7) 		670.5
(-1.6) 		347
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 288.8
(2.9)
P 		194.6
(-0.1)
P 		291.2
(3)
P 		102.5
(-3)
P 		189
B 291.8
(3)
P 		215.2
(-3)
P 		265.7
(1)
P 		237.4
(-1.3)
P 		77
C 290.8
(-0.6)
P 		278.9
(-0.8)
P 		435.4
(3)
P 		191.2
(-3)
P 		244
avr 290.5
(1.4) 		229.6
(-0.9) 		330.8
(3) 		177
(-3) 		154

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 176.6
(-0.2)
P 		249.8
(3)
P 		110.8
(-3)
P 		127.8
(-2.3)
P 		242.5
(2.7)
P 		150.5
(-1.3)
P 		139
B 345.6
(3)
P 		339.5
(2.8)
P 		161.3
(-3)
P 		204.2
(-1.6)
P 		282.2
(0.9)
P 		280.9
(0.9)
P 		184
C 319.9
(3)
P 		286.3
(2.1)
P 		159.9
(-1.4)
P 		100.4
(-3)
P 		215.6
(0.1)
P 		214.3
(0.1)
P 		220
avr 280.7
(2.5) 		291.9
(3) 		144
(-3) 		144.1
(-3) 		246.8
(1.2) 		215.2
(-0.1) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25855
Sequence Type Exemplar sequence
Representative Public ID CEC1745 NCBI
Target Description CEC1745 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C36B7.6 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C13174 /WB_GENE_ID=C36B7.6 /WP=CE04177 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk165a8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076795(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076795 NCBI Caenorhabditis elegans C36B7.6 (C36B7.6) mRNA, complete cds. 11/11 None
C36B7.6.1 ENSEMBL cdna:known chromosome:CEL140:X:7097411:7100286:-1 gene:C36B7.6 11/11 None
C36B7.6.2 ENSEMBL cdna:known chromosome:CEL140:X:7097411:7100288:-1 gene:C36B7.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024847 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7097420-7100600(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36B7.6
Entrez Gene 180976 Entrez gene
SwissProt Q966P8 EMBL-EBI
WormBase CE34267 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7858.1.S1_AT similar to cleft lip and palate associated transmembrane protein 1 cfa
CANINE_2:CFAAFFX.7860.1.S1_S_AT similar to cleft lip and palate associated transmembrane protein 1 cfa
DROSOPHILA_2:1623434_AT dm
DROSGENOME1:141359_AT dm
HG-U133A:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A_2:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133_PLUS_2:201640_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133_PLUS_2:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-FOCUS:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U133A_2:211136_S_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_W68721_F_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_W68721_R_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_R56100_F_AT cleft lip and palate associated transmembrane protein 1 hs
HU35KSUBD:RC_H16171_F_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:G4502896_3P_A_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:G13436079_3P_A_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:211136_3P_S_AT cleft lip and palate associated transmembrane protein 1 hs
U133_X3P:201640_3P_X_AT cleft lip and palate associated transmembrane protein 1 hs
HG-U95AV2:41413_AT cleft lip and palate associated transmembrane protein 1 hs
MU11KSUBA:D67067_S_AT cleft lip and palate associated transmembrane protein 1 mm
MG-U74AV2:95713_AT cleft lip and palate associated transmembrane protein 1 mm
MOE430A:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
MOUSE430A_2:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
MOUSE430_2:1416883_AT cleft lip and palate associated transmembrane protein 1 mm
RG-U34C:RC_AI175271_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
RAE230A:1371473_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
RAT230_2:1371473_AT cleft lip and palate associated transmembrane protein 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast NP_509196 C36B7.6 [Caenorhabditis elegans] gb|AAK68233.2| Hypothetical protein C36B7.6 [Caenorhabditis elegans] 0.0
blast CAE65840 Hypothetical protein CBG10971 [Caenorhabditis briggsae] 0.0
blast CAE59659 Hypothetical protein CBG03077 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008429 EMBL-EBI Cleft lip and palate transmembrane 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509196.2 5 323-345,358-380,445-467,472-494,509-531
C36B7.6.1 5 323-345,358-380,445-467,472-494,509-531
C36B7.6.2 5 323-345,358-380,445-467,472-494,509-531
Sequence
Target Sequence 
>C. ELEGANS:173525_AT
atatcaatcattcccctttttttattaattttctttttaagccacatgtcgcaacattat
gccttgaacagcaatatcacttactccgaagcacaatttcaatcaaagcatctctagatt
tattcagttctttttattcaaattctgctcccaaagaccttttctttctccctctgtgat
gtttacgtgtgattttgaattatatttcaatttacggcaactaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCAATCATTCCCCTTTTTTTAT 650 19 2051 Antisense
TTCTTTTTAAGCCACATGTCGCAAC 39 687 2081 Antisense
GTCGCAACATTATGCCTTGAACAGC 305 475 2098 Antisense
GAACAGCAATATCACTTACTCCGAA 40 351 2116 Antisense
TCACTTACTCCGAAGCACAATTTCA 665 627 2127 Antisense
ACAATTTCAATCAAAGCATCTCTAG 205 115 2143 Antisense
AAGCATCTCTAGATTTATTCAGTTC 289 151 2156 Antisense
TCTTTTTATTCAAATTCTGCTCCCA 45 617 2179 Antisense
CAAATTCTGCTCCCAAAGACCTTTT 98 193 2189 Antisense
TCTGTGATGTTTACGTGTGATTTTG 620 607 2223 Antisense
TATATTTCAATTTACGGCAACTAAT 203 661 2251 Antisense
Sequence Source Affymetrix Proprietary Database