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[173524_at]

Description CEC9731 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2096.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08973 /WB_GENE_ID=D2096.8 /WP=CE04306 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142g8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 22      4grp_high_8_8 > 15      6grp_highest_nonorm > 38      6grp_total > 76      4grp_total > 01      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11359
1 2 3 4 range
A 7027
(-2.4)
P 		5968.4
(-3)
P 		8093.8
(-1.9)
P 		17327.8
(3)
P 		11359
B 6721.4
(-3)
P 		7110.1
(-2.7)
P 		7874.4
(-2.2)
P 		15870.2
(3)
P 		9149
C 7123.7
(-3)
P 		7533.9
(-2.8)
P 		8709.6
(-2)
P 		17092.9
(3)
P 		9969
avr 6957.4
(-2.9) 		6870.8
(-3) 		8225.9
(-2.2) 		16763.6
(3) 		9893

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2946
1 2 3 4 5 6 range
A 6608.4
(0.9)
P 		5964.5
(-1.5)
P 		5540.1
(-3)
P 		6063.9
(-1.1)
P 		7196.1
(3)
P 		5937.5
(-1.6)
P 		1656
B 6449.6
(-2.5)
P 		6767.3
(-1.6)
P 		7782.9
(1.1)
P 		6752.3
(-1.7)
P 		6265.3
(-3)
P 		8485.7
(3)
P 		2220
C 5671.4
(-3)
P 		6566
(-0.8)
P 		6045.4
(-2.1)
P 		6836.3
(-0.1)
P 		6142
(-1.8)
P 		8114.6
(3)
P 		2443
avr 6243.1
(-3) 		6432.6
(-2.1) 		6456.1
(-2) 		6550.8
(-1.5) 		6534.5
(-1.6) 		7512.6
(3) 		1270
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2086
1 2 3 4 range
A 2558.5
(3)
P 		1295.6
(-3)
P 		2115.9
(0.9)
P 		2536.4
(2.9)
P 		1263
B 2143.4
(-1.6)
P 		1756
(-3)
P 		1824.7
(-2.7)
P 		3381.9
(3)
P 		1626
C 2358.2
(-1.7)
P 		2166
(-3)
P 		3035.6
(3)
P 		2882.1
(1.9)
P 		870
avr 2353.4
(0.1) 		1739.2
(-3) 		2325.4
(-0.1) 		2933.5
(3) 		1194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1958
1 2 3 4 5 6 range
A 1218.2
(-2.9)
P 		2121.3
(2.7)
P 		1206.5
(-3)
P 		1537.9
(-0.9)
P 		2171.5
(3)
P 		1445.6
(-1.5)
P 		965
B 2244.1
(-1)
P 		2252.5
(-1)
P 		1889.9
(-2.6)
P 		1788.5
(-3)
P 		2545.5
(0.3)
P 		3164.3
(3)
P 		1376
C 2102.2
(0.3)
P 		2003.5
(-0.2)
P 		1538.7
(-2.3)
P 		1374.8
(-3)
P 		1987.5
(-0.3)
P 		2716.4
(3)
P 		1342
avr 1854.8
(-0.9) 		2125.8
(0.9) 		1545
(-3) 		1567.1
(-2.9) 		2234.8
(1.6) 		2442.1
(3) 		897
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173524_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24767
Sequence Type Exemplar sequence
Representative Public ID CEC9731 NCBI
Target Description CEC9731 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D2096.8 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C08973 /WB_GENE_ID=D2096.8 /WP=CE04306 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk142g8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069021 NCBI Caenorhabditis elegans D2096.8 (D2096.8) mRNA, complete cds. 11/11 None
D2096.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:8377687:8379301:-1 gene:D2096.8 11/11 None
D2096.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:8377701:8379308:-1 gene:D2096.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8377722-8379300(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.8
Entrez Gene 177636 Entrez gene
SwissProt Q19007 EMBL-EBI
WormBase CE04306 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:15946_S_AT nucleosome assembly protein (NAP), putative at
ATH1-121501:253996_AT nucleosome assembly protein (NAP), putative at
CANINE:1605892_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
CANINE:1596106_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
CANINE_2:CFA.10810.2.S1_S_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
CANINE_2:CFA.10810.3.S1_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
CANINE_2:CFA.20303.1.S1_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
CANINE_2:CFAAFFX.9503.1.S1_AT similar to Nucleosome assembly protein 1-like 1 (NAP-1 related protein) (hNRP) cfa
DROSOPHILA_2:1626785_AT Nucleosome assembly protein 1 dm
DROSGENOME1:154024_AT Nucleosome assembly protein 1 dm
CHICKEN:GGA.4630.1.S1_S_AT nucleosome assembly protein 1-like 1 gga
HG-U133_PLUS_2:208753_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:208753_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:208753_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133_PLUS_2:208754_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:208754_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:208754_S_AT nucleosome assembly protein 1-like 1 hs
HG-FOCUS:208754_S_AT nucleosome assembly protein 1-like 1 hs
HG-U95AV2:571_AT nucleosome assembly protein 1-like 1 hs
HC-G110:571_AT nucleosome assembly protein 1-like 1 hs
HG-U133_PLUS_2:208752_X_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:208752_X_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:208752_X_AT nucleosome assembly protein 1-like 1 hs
HUGENEFL:M86667_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:204528_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133_PLUS_2:204528_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:204528_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133_PLUS_2:212967_X_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:212967_X_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:212967_X_AT nucleosome assembly protein 1-like 1 hs
U133_X3P:G7328143_3P_S_AT nucleosome assembly protein 1-like 1 hs
U133_X3P:G4758755_3P_A_AT nucleosome assembly protein 1-like 1 hs
U133_X3P:HS.179662.1.S1_3P_A_AT nucleosome assembly protein 1-like 1 hs
HG-U133A_2:213864_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133_PLUS_2:213864_S_AT nucleosome assembly protein 1-like 1 hs
HG-U133A:213864_S_AT nucleosome assembly protein 1-like 1 hs
HG-U95AV2:34099_F_AT nucleosome assembly protein 1-like 1 hs
HG-U95AV2:40634_AT nucleosome assembly protein 1-like 1 hs
HG-U95E:72989_AT nucleosome assembly protein 1-like 1 hs
HG-U95E:73229_AT nucleosome assembly protein 1-like 1 hs
HG-U95D:75321_F_AT nucleosome assembly protein 1-like 1 hs
HG-U95E:91187_S_AT nucleosome assembly protein 1-like 1 hs
HG-U95E:91189_R_AT nucleosome assembly protein 1-like 1 hs
HG-U95E:91546_R_AT nucleosome assembly protein 1-like 1 hs
HU35KSUBA:RC_AA167269_AT 60S ribosomal protein L6 (RPL6A) hs
U133_X3P:HS2.419776.1.S1_3P_AT 60S ribosomal protein L6 (RPL6A) hs
HG-U133_PLUS_2:1556121_AT 60S ribosomal protein L6 (RPL6A) hs
HG-U95B:47018_AT 60S ribosomal protein L6 (RPL6A) hs
HG-U95C:56876_R_AT 60S ribosomal protein L6 (RPL6A) hs
HG-U95E:70700_AT 60S ribosomal protein L6 (RPL6A) hs
HU35KSUBA:AA422160_AT 60S ribosomal protein L6 (RPL6A) hs
HU35KSUBB:RC_H77534_AT 60S ribosomal protein L6 (RPL6A) hs
MOUSE430A_2:1420477_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1420477_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1420477_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1420476_A_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1420476_A_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1420476_A_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1452778_X_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1452778_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1452778_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1437945_X_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1437945_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1437945_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1420479_A_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1420479_A_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1420479_A_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1420478_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1420478_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1420478_AT nucleosome assembly protein 1-like 1 mm
MU11KSUBA:C77764_RC_F_AT nucleosome assembly protein 1-like 1 mm
MU11KSUBB:X61449_S_AT nucleosome assembly protein 1-like 1 mm
MU11KSUBB:MSA.28.0_F_AT nucleosome assembly protein 1-like 1 mm
MG-U74AV2:98587_AT nucleosome assembly protein 1-like 1 mm
MG-U74AV2:98586_AT nucleosome assembly protein 1-like 1 mm
MG-U74BV2:164552_I_AT nucleosome assembly protein 1-like 1 mm
MOE430A:1429227_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430A_2:1429227_X_AT nucleosome assembly protein 1-like 1 mm
MOUSE430_2:1429227_X_AT nucleosome assembly protein 1-like 1 mm
MU11KSUBB:MSA.34559.0_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBA:TC17399_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC32614_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC32614_G_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC33178_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC33178_G_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC33179_F_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC33180_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
MU19KSUBB:TC34213_AT Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA mm
RG-U34A:AF062594_AT nucleosome assembly protein 1-like 1 rn
RG-U34A:AF062594_G_AT nucleosome assembly protein 1-like 1 rn
RG-U34B:RC_AI011922_AT nucleosome assembly protein 1-like 1 rn
RAE230A:1373473_A_AT nucleosome assembly protein 1-like 1 rn
RAT230_2:1373473_A_AT nucleosome assembly protein 1-like 1 rn
RAE230A:1370826_AT nucleosome assembly protein 1-like 1 rn
RAT230_2:1370826_AT nucleosome assembly protein 1-like 1 rn
RG-U34B:RC_AI030668_AT Nucleosome assembly protein 1-like 1 rn
RAE230A:1371872_AT Nucleosome assembly protein 1-like 1 rn
RAT230_2:1371872_AT Nucleosome assembly protein 1-like 1 rn
RG-U34A:RC_AA859920_AT Nucleosome assembly protein 1-like 1 rn
RG-U34A:RC_AA866472_AT Nucleosome assembly protein 1-like 1 rn
YEAST_2:1777087_AT Protein that interacts with mitotic cyclin Clb2p; required for the regulation of microtubule dynamics during mitosis; controls bud morphogenesis; involved in the transport of H2A and H2B histones to the nucleus Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6334 nucleosome assembly inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501422 D2096.8 [Caenorhabditis elegans] gb|AAA81494.1| Hypothetical protein D2096.8 [Caenorhabditis elegans] 1.0E-158
blast CAE73742 Hypothetical protein CBG21270 [Caenorhabditis briggsae] 1.0E-111
blast CAB58173 putative nucleosome binding protein [Anisakis simplex] 7.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR002164 EMBL-EBI Nucleosome assembly protein (NAP) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173524_AT
gaggcttaagcagtatcgatggaccacttattaatttgccaatttttgaaattattaatt
ttccattttcttttttaaaatttttttgattattcccaaccccttcacataataggcgga
aaaccgattgttgctgttacttgttgttgtcgtttattccctgacctatccatattccgc
ttctcccaatctctaaagatatacctgaaaacgagttgtcgtcgaaatacttgatacatg
ttgtcttcatcctggtgtatgttgtttcgcaaattcttcatactagttatgataggattt
gaatgagctggcacgagtcgacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTTAAGCAGTATCGATGGACC 680 405 956 Antisense
GGACCACTTATTAATTTGCCAATTT 693 521 976 Antisense
TTCCCAACCCCTTCACATAATAGGC 291 697 1048 Antisense
GGCGGAAAACCGATTGTTGCTGTTA 357 541 1070 Antisense
GTTGCTGTTACTTGTTGTTGTCGTT 355 439 1085 Antisense
TTGTTGTCGTTTATTCCCTGACCTA 626 675 1099 Antisense
CGCTTCTCCCAATCTCTAAAGATAT 464 255 1133 Antisense
ATACATGTTGTCTTCATCCTGGTGT 608 23 1189 Antisense
ATCCTGGTGTATGTTGTTTCGCAAA 446 39 1204 Antisense
GTTTCGCAAATTCTTCATACTAGTT 426 451 1219 Antisense
GAATGAGCTGGCACGAGTCGACTTT 645 331 1256 Antisense
Sequence Source Affymetrix Proprietary Database