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[173523_s_at]

Description C68456 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F11C7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68456 /WB_GENE_ID=F11C7.5 /WP=CE17657 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk304a12 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 44      6grp_high1_10_10 > 43      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 66      6grp_total > 10      4grp_total > 05      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2795
1 2 3 4 range
A 3011.6
(-0)
P 		2020
(-3)
P 		2815.2
(-0.6)
P 		4036.7
(3)
P 		2017
B 2924.4
(-1.3)
P 		2156.5
(-3)
P 		2888
(-1.3)
P 		4815.1
(3)
P 		2659
C 3155.5
(0.9)
P 		2694.5
(-0.9)
P 		2164.8
(-3)
P 		3700.2
(3)
P 		1535
avr 3030.5
(-0.7) 		2290.3
(-3) 		2622.7
(-1.9) 		4184
(3) 		1894

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 968
1 2 3 4 5 6 range
A 1055.3
(-3)
P 		1906.1
(3)
P 		1511.6
(0.2)
P 		1429.2
(-0.4)
P 		1545
(0.5)
P 		1374.5
(-0.7)
P 		851
B 1031.6
(-3)
P 		1949.5
(3)
P 		1533.1
(0.3)
P 		1567.4
(0.5)
P 		1454.6
(-0.2)
P 		1229.3
(-1.7)
P 		918
C 1259.2
(-1.2)
P 		1912.5
(3)
P 		1715
(1.7)
P 		1317.2
(-0.8)
P 		1480.2
(0.2)
P 		981.2
(-3)
P 		931
avr 1115.4
(-3) 		1922.7
(3) 		1586.6
(0.5) 		1437.9
(-0.6) 		1493.3
(-0.2) 		1195
(-2.4) 		807
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 658
1 2 3 4 range
A 1096.5
(3)
P 		438.5
(-3)
P 		735.9
(-0.3)
P 		590.9
(-1.6)
P 		658
B 932.6
(1.9)
P 		532.6
(-3)
P 		669.2
(-1.3)
P 		1026.1
(3)
P 		494
C 1044.6
(3)
P 		774.7
(-0.8)
P 		754.5
(-1.1)
P 		623.9
(-3)
P 		421
avr 1024.6
(3) 		581.9
(-3) 		719.9
(-1.1) 		747
(-0.8) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 483
1 2 3 4 5 6 range
A 194.5
(-3)
P 		677.9
(3)
P 		329.2
(-1.3)
P 		362.5
(-0.9)
P 		466.2
(0.4)
P 		334.7
(-1.3)
P 		483
B 359
(-3)
P 		648.9
(3)
P 		372.3
(-2.7)
P 		415.1
(-1.8)
P 		591
(1.8)
P 		458.4
(-0.9)
P 		290
C 466.7
(0.8)
P 		583.6
(3)
P 		436.5
(0.2)
P 		264.9
(-3)
P 		479
(1)
P 		328.5
(-1.8)
P 		319
avr 340.1
(-3) 		636.8
(3) 		379.3
(-2.2) 		347.5
(-2.9) 		512.1
(0.5) 		373.9
(-2.3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173523_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26088
Sequence Type Exemplar sequence
Representative Public ID C68456 NCBI
Target Description C68456 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F11C7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68456 /WB_GENE_ID=F11C7.5 /WP=CE17657 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk304a12 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078422 NCBI Caenorhabditis elegans F11C7.5 (F11C7.5) mRNA, complete cds. 11/11 None
GENEFINDER00000033138 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17418687:17421319:-1 9/11 None
SNAP00000033131 ENSEMBL cdna:SNAP chromosome:CEL140:X:17420668:17421319:-1 11/11 None
F11C7.5 ENSEMBL cdna:known chromosome:CEL140:X:17420133:17421359:-1 gene:F11C7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17420612-17421319(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F11C7.5
Entrez Gene 181772 Entrez gene
SwissProt O45346 EMBL-EBI
WormBase CE17657 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69016 Hypothetical protein F11C7.5 [Caenorhabditis elegans] ref|NP_510823.1| F11C7.5 [Caenorhabditis elegans] 1.0E-111
blast AAC69016 Hypothetical protein F11C7.5 [Caenorhabditis elegans] ref|NP_510823.1| F11C7.5 [Caenorhabditis elegans] 1.0E-101
blast CAE69677 Hypothetical protein CBG15929 [Caenorhabditis briggsae] 1.0E-96
blast CAE69677 Hypothetical protein CBG15929 [Caenorhabditis briggsae] 3.0E-87
blast CAE56484 Hypothetical protein CBG24198 [Caenorhabditis briggsae] 7.0E-62
Sequence
Target Sequence 
>C. ELEGANS:173523_S_AT
ctcgctatcgttatggtcttggcacaagccaaccctgcccgtgttcgtcgcaatgaggag
atgtccgaacgttattgcatcaagcatcttgaccactacaacaaatactgtggagacaac
gctggaccaattgaccgtgctctctttggaaaggttgccaagttctgcccagcctacgaa
aagcactgtgccgttggaaaggccggactcgtcgagcttccagacctcggctcaccactc
gttatgccaccagtccttccaagaggatccgactttgccagcctcgatttgccaatcgcc
gatgagcgcaagccagcccacatccactcctcaagaaccgctccacagaccacccgtctc
accgccgccatcgtagccacctgcactccagaatgcaccgccgctcactgcaccgacgag
tgcaagtgcgcccacactcatccaaaggtccatcaaatgtgcaacccaccatcttccgct
gccatggccgagacttgccaacgttggtactccaagtgcaccatgttcactccagtgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGCTATCGTTATGGTCTTGGCAC 469 233 38 Antisense
GCCCGTGTTCGTCGCAATGAGGAGA 243 287 74 Antisense
GACAACGCTGGACCAATTGACCGTG 84 365 152 Antisense
AATTGACCGTGCTCTCTTTGGAAAG 537 165 166 Antisense
TGGAAAGGTTGCCAAGTTCTGCCCA 619 547 184 Antisense
TTCTGCCCAGCCTACGAAAAGCACT 49 693 200 Antisense
TGCCACCAGTCCTTCCAAGAGGATC 39 587 282 Antisense
CAATCGCCGATGAGCGCAAGCCAGC 124 183 330 Antisense
ATCAAATGTGCAACCCACCATCTTC 445 27 489 Antisense
GGCCGAGACTTGCCAACGTTGGTAC 400 529 523 Antisense
AGTGCACCATGTTCACTCCAGTGCA 146 59 552 Antisense
Sequence Source Affymetrix Proprietary Database