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[173521_at]

Description CEK007A4F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C48G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27109 /WB_GENE_ID=C48G7.3 /WP=CE23604 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7a4 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 76      6grp_total > 39      4grp_total > 54      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 1036.9
(3)
P 		835.2
(0.4)
P 		874.6
(0.9)
P 		574.3
(-3)
P 		463
B 1063.7
(3)
P 		930.5
(0.4)
P 		754.8
(-3)
P 		855
(-1.1)
P 		309
C 894.1
(3)
P 		720
(-3)
P 		848.4
(1.4)
P 		733.9
(-2.5)
P 		174
avr 998.2
(3) 		828.6
(-0.7) 		825.9
(-0.7) 		721.1
(-3) 		277

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 857
1 2 3 4 5 6 range
A 1424.4
(3)
P 		1175
(1.3)
P 		567.7
(-3)
P 		866.4
(-0.9)
P 		1315.5
(2.2)
P 		1112.1
(0.8)
P 		857
B 1222.4
(3)
P 		1202.7
(2.8)
P 		640.6
(-3)
P 		1112
(1.9)
P 		984.9
(0.6)
P 		1103.5
(1.8)
P 		582
C 1138
(3)
P 		1090.2
(1.9)
P 		882
(-3)
P 		930.7
(-1.9)
P 		1061.1
(1.2)
P 		938.5
(-1.7)
P 		256
avr 1261.6
(3) 		1156
(1.9) 		696.8
(-3) 		969.7
(-0.1) 		1120.5
(1.5) 		1051.4
(0.8) 		565
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 293
1 2 3 4 range
A 377.5
(3)
P 		181.3
(-1)
P 		228.6
(-0)
P 		84.1
(-3)
P 		293
B 339.2
(3)
P 		229.8
(-1)
P 		174.9
(-3)
P 		182.2
(-2.7)
P 		164
C 296
(3)
P 		207
(-0.1)
P 		295.7
(3)
P 		123.7
(-3)
P 		172
avr 337.6
(3) 		206
(-0.8) 		233.1
(-0) 		130
(-3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 302
1 2 3 4 5 6 range
A 262.6
(-0.2)
P 		417.9
(3)
P 		123.6
(-3)
P 		219.7
(-1)
P 		397
(2.6)
P 		270.8
(0)
P 		294
B 425.3
(3)
P 		400.3
(2.4)
P 		155.6
(-3)
P 		294.5
(0.1)
P 		400.1
(2.4)
P 		411.5
(2.7)
P 		270
C 421.8
(3)
P 		332.7
(0.7)
P 		224.5
(-2)
P 		187.2
(-3)
P 		343.3
(1)
P 		314.2
(0.2)
P 		235
avr 369.9
(2.6) 		383.6
(3) 		167.9
(-3) 		233.8
(-1.2) 		380.1
(2.9) 		332.2
(1.6) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25409
Sequence Type Exemplar sequence
Representative Public ID CEK007A4F NCBI
Target Description CEK007A4F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C48G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27109 /WB_GENE_ID=C48G7.3 /WP=CE23604 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk7a4 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074249 NCBI Caenorhabditis elegans C48G7.3 (C48G7.3) mRNA, complete cds. 11/11 None
C48G7.3 ENSEMBL cdna:known chromosome:CEL140:V:14786769:14799601:-1 gene:C48G7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14786779-14790313(-) 98.44 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-333
Ensembl C48G7.3
Entrez Gene 3565509 Entrez gene
SwissProt Q9TVM3 EMBL-EBI
WormBase CE23604 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60286 Hypothetical protein C48G7.3 [Caenorhabditis elegans] emb|CAB60587.1| Hypothetical protein C48G7.3 [Caenorhabditis elegans] ref|NP_506650.1| C48G7.3 [Caenorhabditis elegans] 0.0
blast CAE66361 Hypothetical protein CBG11618 [Caenorhabditis briggsae] 0.0
blast XP_394766 PREDICTED: similar to CG33175-PG, isoform G, partial [Apis mellifera] 8.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR003123 EMBL-EBI Vacuolar sorting protein 9 5.7E-63
Pfam IPR000159 EMBL-EBI RA domain 2.7E-19
Sequence
Target Sequence 
>C. ELEGANS:173521_AT
gcagcgatttgctgagctcttccaattttagtctcatctagtctagcttctttgtatccc
tgtttcatataaactgagccgttccatttctttcctctttcccaatccagaaaaaaagct
ttacatcccagtccctttatctgtgctaaaccaagacattcaaactgtttctactcccct
ttccactcaaattcatcttcctcattgtttcaaaaatatgggtattcttctcattcgtct
tctaaaaatagttttaaaatgttttattcgccttttcacccgttcatttttgttctgttt
tattgatttctctcacttttccccctttttaatcttgttcaattagctcgcatttcttct
atccaccagtgattattccccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCGATTTGCTGAGCTCTTCCAA 271 315 1988 Antisense
AGCTCTTCCAATTTTAGTCTCATCT 99 81 2002 Antisense
TCTAGTCTAGCTTCTTTGTATCCCT 432 611 2024 Antisense
TAAACTGAGCCGTTCCATTTCTTTC 344 641 2057 Antisense
GTCCCTTTATCTGTGCTAAACCAAG 379 471 2118 Antisense
AAATTCATCTTCCTCATTGTTTCAA 43 117 2176 Antisense
ATTCTTCTCATTCGTCTTCTAAAAA 547 11 2211 Antisense
TCACCCGTTCATTTTTGTTCTGTTT 232 625 2263 Antisense
TTTATTGATTTCTCTCACTTTTCCC 542 673 2286 Antisense
CAATTAGCTCGCATTTCTTCTATCC 166 181 2327 Antisense
CTATCCACCAGTGATTATTCCCCAT 265 225 2346 Antisense
Sequence Source Affymetrix Proprietary Database