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[173520_at]

Description CEK004B1F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T20B5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27811 /WB_GENE_ID=T20B5.3 /WP=CE02881 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 59      4grp_total > 21      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 244.6
(3)
P 		149.9
(-0.8)
P 		96.6
(-3)
P 		152.8
(-0.7)
P 		148
B 80.4
(-3)
P 		95.3
(-2.4)
P 		83.9
(-2.9)
P 		220.4
(3)
P 		140
C 150
(-2.5)
P 		197.6
(1.4)
P 		217.2
(3)
P 		143.3
(-3)
P 		74
avr 158.3
(0.9) 		147.6
(-0.7) 		132.6
(-3) 		172.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 140
(-1.4)
P 		94
(-3)
P 		101.5
(-2.7)
P 		262.3
(3)
P 		151.1
(-1)
P 		115.6
(-2.2)
P 		168
B 220.9
(2.5)
P 		136.6
(-0.9)
P 		83
(-3)
P 		127.1
(-1.2)
P 		126.7
(-1.3)
P 		233.1
(3)
P 		150
C 171.9
(-0.8)
P 		162.9
(-1)
P 		77.6
(-2.9)
P 		70.9
(-3)
P 		202.2
(-0.1)
P 		345.1
(3)
P 		274
avr 177.6
(0.8) 		131.2
(-1.2) 		87.4
(-3) 		153.4
(-0.2) 		160
(0) 		231.3
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 89.1
(3)
P 		32.5
(-2.1)
P 		25.3
(-2.7)
P 		22.4
(-3)
P 		67
B 25.7
(-1.6)
P 		23.5
(-2.1)
P 		19.4
(-3)
P 		47
(3)
P 		28
C 49.7
(-0)
P 		56.8
(0.8)
P 		75.7
(3)
P 		24.2
(-3)
P 		52
avr 54.8
(3) 		37.6
(-1.4) 		40.1
(-0.7) 		31.2
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 25.8
(-2.5)
P 		33.4
(-1.5)
P 		22.1
(-3)
P 		66.5
(3)
P 		45.6
(0.2)
P 		28.1
(-2.2)
P 		44
B 76.9
(2.1)
P 		45.5
(-0.7)
P 		20.2
(-3)
P 		33.7
(-1.8)
P 		51.5
(-0.2)
P 		86.9
(3)
P 		67
C 63.7
(-0.1)
P 		49.7
(-0.9)
P 		19.7
(-2.7)
P 		14.3
(-3)
P 		65.4
(0)
P 		115.5
(3)
P 		101
avr 55.5
(0.7) 		42.9
(-0.6) 		20.7
(-3) 		38.2
(-1.1) 		54.2
(0.6) 		76.8
(3) 		56
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173520_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.26000
Sequence Type Exemplar sequence
Representative Public ID CEK004B1F NCBI
Target Description CEK004B1F /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T20B5.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=D27811 /WB_GENE_ID=T20B5.3 /WP=CE02881 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk4b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077172(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077172 NCBI Caenorhabditis elegans T20B5.3 (T20B5.3) mRNA, complete cds. 11/11 None
T20B5.3 ENSEMBL cdna:known chromosome:CEL140:X:9343139:9347349:-1 gene:T20B5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9343334-9347309(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol oga-1
Ensembl T20B5.3
Entrez Gene 181164 Entrez gene
SwissProt Q22602 EMBL-EBI
WormBase CE37273 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1591625_AT similar to meningioma expressed antigen 5 (hyaluronidase) cfa
CANINE:1588283_AT similar to meningioma expressed antigen 5 (hyaluronidase) cfa
CANINE_2:CFA.12702.1.A1_AT similar to meningioma expressed antigen 5 (hyaluronidase) cfa
CANINE_2:CFA.12884.1.S1_AT similar to meningioma expressed antigen 5 (hyaluronidase) cfa
CANINE_2:CFAAFFX.15618.1.S1_S_AT similar to meningioma expressed antigen 5 (hyaluronidase) cfa
CHICKEN:GGAAFFX.22338.1.S1_AT similar to meningioma expressed antigen 5 (hyaluronidase) gga
HG-U133_PLUS_2:200899_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A:200899_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A_2:200899_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-FOCUS:200899_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A:200898_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133_PLUS_2:200898_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A_2:200898_S_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133B:223494_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133_PLUS_2:223494_AT meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBA:RC_AA424791_AT meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBB:RC_W01875_AT meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBD:RC_AA416940_AT meningioma expressed antigen 5 (hyaluronidase) hs
U133_X3P:G11024697_3P_A_AT meningioma expressed antigen 5 (hyaluronidase) hs
U133_X3P:G10645185_3P_AT meningioma expressed antigen 5 (hyaluronidase) hs
U133_X3P:HS.5734.0.S1_3P_A_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U95AV2:35317_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U95B:48121_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U95C:57000_F_AT meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133_PLUS_2:214972_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A_2:214972_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133A:214972_AT Meningioma expressed antigen 5 (hyaluronidase) hs
U133_X3P:HS.291002.0.S1_3P_AT Meningioma expressed antigen 5 (hyaluronidase) hs
U133_X3P:HS.274237.0.S1_3P_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133_PLUS_2:235868_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HG-U133B:235868_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HG-U95D:71251_R_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBD:RC_AA284256_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBA:AA190226_AT Meningioma expressed antigen 5 (hyaluronidase) hs
HU35KSUBA:W27503_AT Meningioma expressed antigen 5 (hyaluronidase) hs
MG-U74AV2:94499_AT meningioma expressed antigen 5 (hyaluronidase) mm
MG-U74CV2:135585_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOE430A:1439081_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430A_2:1439081_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430_2:1439081_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOE430A:1433654_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430A_2:1433654_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430_2:1433654_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOE430A:1422900_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430A_2:1422900_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430_2:1422900_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOE430A:1422902_S_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430A_2:1422902_S_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430_2:1422902_S_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOE430A:1422901_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430A_2:1422901_AT meningioma expressed antigen 5 (hyaluronidase) mm
MOUSE430_2:1422901_AT meningioma expressed antigen 5 (hyaluronidase) mm
MU19KSUBB:TC31777_AT Meningioma expressed antigen 5 (hyaluronidase) (Mgea5), mRNA mm
MU19KSUBC:TC38379_AT Meningioma expressed antigen 5 (hyaluronidase) (Mgea5), mRNA mm
MU19KSUBC:TC40758_AT Meningioma expressed antigen 5 (hyaluronidase) (Mgea5), mRNA mm
RAE230A:1370129_AT meningioma expressed antigen 5 (hyaluronidase) rn
RAT230_2:1370129_AT meningioma expressed antigen 5 (hyaluronidase) rn
RAE230B:1383025_AT meningioma expressed antigen 5 (hyaluronidase) rn
RAT230_2:1383025_AT meningioma expressed antigen 5 (hyaluronidase) rn
RAE230A:1375217_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RAT230_2:1375217_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RAE230B:1395741_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RAT230_2:1395741_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RAE230A:1398969_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RAT230_2:1398969_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RG-U34B:RC_AI008637_AT Meningioma expressed antigen 5 (hyaluronidase) rn
RG-U34B:RC_AI030430_AT Meningioma expressed antigen 5 (hyaluronidase) rn
Protein Similarities
Method ID Description E-Value
blast AAA68333 Hypothetical protein T20B5.3 [Caenorhabditis elegans] ref|NP_509573.2| T20B5.3 [Caenorhabditis elegans] 0.0
blast CAE69833 Hypothetical protein CBG16157 [Caenorhabditis briggsae] 0.0
blast NP_036347 meningioma expressed antigen 5 (hyaluronidase) [Homo sapiens] gb|AAD05385.2| meningioma-expressed antigen 5 [Homo sapiens] 1.0E-102
Sequence
Target Sequence 
>C. ELEGANS:173520_AT
tctacttcagagtgaacaatttcttaaacagcgactgtataaattataaatttaaatgta
tacatgtatcatgttatcacatttttttttcttttctttttttattttcatatgtaacct
agtcaaattcaacgattttgttccaaccgggatatttcacaatttgtgtcacttcaattt
ccgttttattgccttttctttctttccataaacgaaacttttttctgttcaatcaacctg
gtaatacttctttcccgttatggctggttatttatttgcactttttataacaaatcatgc
cacatgagatgtttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTACTTCAGAGTGAACAATTTCTT 2 603 2567 Antisense
GAACAATTTCTTAAACAGCGACTGT 342 353 2580 Antisense
TACATGTATCATGTTATCACATTTT 220 645 2627 Antisense
TATTTTCATATGTAACCTAGTCAAA 204 663 2669 Antisense
CACTTCAATTTCCGTTTTATTGCCT 52 197 2736 Antisense
AACTTTTTTCTGTTCAATCAACCTG 542 139 2782 Antisense
TTTTCTGTTCAATCAACCTGGTAAT 606 673 2787 Antisense
TCAACCTGGTAATACTTCTTTCCCG 228 607 2799 Antisense
GGCTGGTTATTTATTTGCACTTTTT 586 539 2828 Antisense
CACTTTTTATAACAAATCATGCCAC 376 195 2845 Antisense
AAATCATGCCACATGAGATGTTTCG 603 117 2858 Antisense
Sequence Source Affymetrix Proprietary Database