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[173519_at]

Description C69136 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05A12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69136 /WB_GENE_ID=T05A12.3 /WP=CE04898 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311c3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 93      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 74      6grp_total > 95      4grp_total > 03      6grp_high1_sub > 04      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1044
1 2 3 4 range
A 571.1
(-2.2)
P 		476.6
(-3)
P 		501.2
(-2.8)
P 		1178.5
(3)
P 		702
B 560.5
(-2.2)
P 		422.5
(-3)
P 		446.2
(-2.9)
P 		1463.7
(3)
P 		1041
C 591.7
(-1.6)
P 		420.2
(-3)
P 		652.8
(-1.1)
P 		1141.9
(3)
P 		722
avr 574.4
(-2) 		439.8
(-3) 		533.4
(-2.3) 		1261.4
(3) 		822

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 607.7
(-1.3)
P 		553.2
(-1.8)
P 		436.1
(-3)
P 		724.2
(-0.1)
P 		1037.7
(3)
P 		810.6
(0.7)
P 		602
B 589.5
(-1.1)
P 		658.6
(-0)
P 		466.1
(-3)
P 		797.6
(2.1)
P 		681.5
(0.3)
P 		856.7
(3)
P 		391
C 656.3
(-1.2)
P 		669.2
(-1.1)
P 		452.2
(-3)
P 		1125.1
(3)
P 		704.1
(-0.8)
P 		871.9
(0.7)
P 		673
avr 617.8
(-0.7) 		627
(-0.6) 		451.5
(-3) 		882.3
(3) 		807.8
(2) 		846.4
(2.5) 		431
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 207.9
(3)
P 		103.5
(-3)
P 		131
(-1.4)
P 		172.5
(1)
P 		104
B 178.7
(-0.8)
P 		104.3
(-3)
P 		103.4
(-3)
P 		311.9
(3)
P 		209
C 195.9
(1.2)
P 		120.8
(-3)
P 		227.5
(3)
P 		192.5
(1)
P 		107
avr 194.2
(1.4) 		109.5
(-3) 		154
(-0.7) 		225.6
(3) 		116

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 112
(-2.5)
P 		196.7
(-0.2)
P 		95
(-3)
P 		183.7
(-0.6)
P 		313.1
(3)
P 		197.3
(-0.2)
P 		218
B 205.1
(-0.3)
P 		219.2
(0.1)
P 		113.2
(-3)
P 		211.3
(-0.1)
P 		276.9
(1.8)
P 		319.4
(3)
P 		206
C 243.3
(1.4)
P 		204.2
(0)
P 		115.1
(-3)
P 		226.3
(0.8)
P 		227.8
(0.8)
P 		291.9
(3)
P 		177
avr 186.8
(-0.1) 		206.7
(0.6) 		107.8
(-3) 		207.1
(0.6) 		272.6
(3) 		269.5
(2.9) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173519_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24613
Sequence Type Exemplar sequence
Representative Public ID C69136 NCBI
Target Description C69136 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05A12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69136 /WB_GENE_ID=T05A12.3 /WP=CE04898 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311c3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068658 NCBI Caenorhabditis elegans T05A12.3 (T05A12.3) mRNA, complete cds. 11/11 None
T05A12.3 ENSEMBL cdna:known chromosome:CEL140:IV:6883565:6887635:-1 gene:T05A12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6883635-6887621(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A12.3
Entrez Gene 177452 Entrez gene
SwissProt Q9GYK8 EMBL-EBI
WormBase CE04898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98587 Hypothetical protein T05A12.3 [Caenorhabditis elegans] ref|NP_501059.1| T05A12.3 [Caenorhabditis elegans] 0.0
blast CAE61755 Hypothetical protein CBG05711 [Caenorhabditis briggsae] 1.0E-119
Sequence
Target Sequence 
>C. ELEGANS:173519_AT
gtagattttcgctttcaatagtatttttctagtttgcttccttttttcttgaaattttct
ccattatttatttatttatttgttttctaagtcaaccttctcaccccatttcccgtcttt
tttcgagtttgtgatacatccttcataattccgctgctcatacacacacattcaatatca
ttgcatttccatgttttatccgaattcgtgtttatcaccacatttctatttccgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGATTTTCGCTTTCAATAGTATT 173 457 1978 Antisense
TAGTATTTTTCTAGTTTGCTTCCTT 672 653 1996 Antisense
TGTTTTCTAAGTCAACCTTCTCACC 274 559 2058 Antisense
TCCCGTCTTTTTTCGAGTTTGTGAT 488 597 2088 Antisense
GTGATACATCCTTCATAATTCCGCT 641 483 2108 Antisense
TCATAATTCCGCTGCTCATACACAC 23 621 2120 Antisense
GCTCATACACACACATTCAATATCA 287 301 2133 Antisense
ATCATTGCATTTCCATGTTTTATCC 134 31 2154 Antisense
GCATTTCCATGTTTTATCCGAATTC 33 309 2160 Antisense
ATCCGAATTCGTGTTTATCACCACA 7 39 2175 Antisense
TATCACCACATTTCTATTTCCGTCT 593 659 2190 Antisense
Sequence Source Affymetrix Proprietary Database