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[173517_at]

Description C49855 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F37B12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49855 /WB_GENE_ID=F37B12.3 /WP=CE03291 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk474g9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 75      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 97      6grp_total > 76      4grp_total > 01      6grp_highest_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1421
1 2 3 4 range
A 713.3
(-2.7)
P 		665
(-3)
P 		823.5
(-1.9)
P 		1493.8
(3)
P 		829
B 757
(-2.3)
P 		598.2
(-3)
P 		797.8
(-2.2)
P 		2018.7
(3)
P 		1421
C 841
(-3)
P 		906.8
(-2.6)
P 		1110.6
(-1.3)
P 		1794.7
(3)
P 		954
avr 770.4
(-2.7) 		723.3
(-3) 		910.6
(-1.9) 		1769.1
(3) 		1046

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1340
1 2 3 4 5 6 range
A 624.1
(-2.8)
P 		600.4
(-3)
P 		973.6
(0.3)
P 		855.4
(-0.7)
P 		850.3
(-0.8)
P 		1273.3
(3)
P 		673
B 922
(-1.4)
P 		770
(-2.1)
P 		567.6
(-3)
P 		1031.9
(-0.9)
P 		913.6
(-1.5)
P 		1907.4
(3)
P 		1340
C 658.8
(-3)
P 		998.8
(0.6)
P 		905.3
(-0.4)
P 		1226.3
(3)
P 		698.1
(-2.6)
P 		1191.6
(2.6)
P 		568
avr 735
(-3) 		789.7
(-2.5) 		815.5
(-2.3) 		1037.9
(-0.5) 		820.7
(-2.3) 		1457.4
(3) 		722
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 259.7
(3)
P 		144.3
(-3)
P 		215.3
(0.7)
P 		218.7
(0.9)
P 		115
B 241.4
(-1)
P 		147.7
(-3)
P 		184.9
(-2.2)
P 		430.2
(3)
P 		283
C 278.4
(-2.2)
P 		260.7
(-3)
P 		387.1
(3)
P 		302.6
(-1)
P 		126
avr 259.8
(0.4) 		184.2
(-3) 		262.4
(0.5) 		317.2
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 596
1 2 3 4 5 6 range
A 115
(-3)
P 		213.5
(0)
P 		212
(-0)
P 		216.9
(0.1)
P 		256.6
(1.4)
P 		310
(3)
P 		195
B 320.8
(-1.1)
P 		256.3
(-1.8)
P 		137.8
(-3)
P 		273.3
(-1.6)
P 		371.2
(-0.6)
P 		711.3
(3)
P 		574
C 244.2
(-2.4)
P 		304.8
(-0.3)
P 		230.4
(-2.8)
P 		246.6
(-2.3)
P 		225.9
(-3)
P 		398.9
(3)
P 		173
avr 226.7
(-2.3) 		258.2
(-1.6) 		193.4
(-3) 		245.6
(-1.9) 		284.6
(-1) 		473.4
(3) 		280
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23441
Sequence Type Exemplar sequence
Representative Public ID C49855 NCBI
Target Description C49855 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F37B12.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49855 /WB_GENE_ID=F37B12.3 /WP=CE03291 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk474g9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063527 NCBI Caenorhabditis elegans F37B12.3 (F37B12.3) mRNA, complete cds. 11/11 None
F37B12.3 ENSEMBL cdna:known chromosome:CEL140:II:9039795:9041972:-1 gene:F37B12.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9039802-9041970(-) 94.68 100.0
Public Domain and Genome References
Gene Title
Ensembl F37B12.3
Entrez Gene 174439 Entrez gene
SwissProt Q20118 EMBL-EBI
WormBase CE03291 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90956 Hypothetical protein F37B12.3 [Caenorhabditis elegans] ref|NP_495928.1| F37B12.3 [Caenorhabditis elegans] 0.0
blast CAE59790 Hypothetical protein CBG03250 [Caenorhabditis briggsae] 1.0E-107
blast AAH75899 Zgc:92136 [Danio rerio] emb|CAH68905.1| novel protein [Danio rerio] ref|NP_001002356.1| hypothetical protein LOC436629 [Danio rerio] 7.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495928.1 1 140-162
F37B12.3 1 140-162
Sequence
Target Sequence 
>C. ELEGANS:173517_AT
gtaatttctaagttcgcacattcctcgatttccacttgccgttacctttcattatctcct
tttactttaatctatcacagtttcatagatatcaaacgttaattttttgttgcgagctag
tttgttttttttcctcttgttcggtccattcgctttaacttgtcacctattttttgtttt
ctctacagtcctcttggttcatgatcctgttaattatcaatgctctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATTTCTAAGTTCGCACATTCCT 478 463 1069 Antisense
CTAAGTTCGCACATTCCTCGATTTC 226 225 1076 Antisense
TTCATTATCTCCTTTTACTTTAATC 291 689 1116 Antisense
TACTTTAATCTATCACAGTTTCATA 595 645 1131 Antisense
ACGTTAATTTTTTGTTGCGAGCTAG 19 95 1164 Antisense
TGCGAGCTAGTTTGTTTTTTTTCCT 34 579 1179 Antisense
GGTCCATTCGCTTTAACTTGTCACC 7 503 1211 Antisense
GCTTTAACTTGTCACCTATTTTTTG 157 305 1220 Antisense
TCTCTACAGTCCTCTTGGTTCATGA 480 609 1248 Antisense
TCCTCTTGGTTCATGATCCTGTTAA 152 593 1257 Antisense
GATCCTGTTAATTATCAATGCTCTT 230 417 1271 Antisense
Sequence Source Affymetrix Proprietary Database