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[173516_at]

Description C68938 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01E11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68938 /WB_GENE_ID=M01E11.4 /WP=CE12294 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298a1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 99      6grp_high1_10_10 > 99      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 69      6grp_total > 94      4grp_total > 59      6grp_cgc > 88      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2042
1 2 3 4 range
A 1913.9
(0.3)
P 		2841.8
(3)
P 		2572.3
(2.2)
P 		799.9
(-3)
P 		2042
B 2030.5
(0.7)
P 		2526.4
(2.3)
P 		2753.1
(3)
P 		889.6
(-3)
P 		1864
C 1870.9
(0.7)
P 		2311.4
(2.4)
P 		2455.1
(3)
P 		921.2
(-3)
P 		1534
avr 1938.4
(0.7) 		2559.9
(2.9) 		2593.5
(3) 		870.2
(-3) 		1723

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2665
1 2 3 4 5 6 range
A 1972.3
(-2)
P 		2048.7
(-1.8)
P 		1551.9
(-3)
P 		2533
(-0.7)
P 		4096.5
(3)
P 		3454.2
(1.5)
P 		2545
B 1431.5
(-3)
P 		2151.5
(-1.4)
P 		1480.3
(-2.9)
P 		2637.7
(-0.2)
P 		4050
(3)
P 		2926.4
(0.4)
P 		2619
C 1692.6
(-3)
P 		1939.6
(-2.3)
P 		2133.4
(-1.8)
P 		2686.5
(-0.4)
P 		3966.9
(3)
P 		2855
(0.1)
P 		2274
avr 1698.8
(-3) 		2046.6
(-2.1) 		1721.9
(-2.9) 		2619.1
(-0.6) 		4037.8
(3) 		3078.5
(0.5) 		2339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 739
1 2 3 4 range
A 696.9
(3)
P 		616.9
(2.2)
P 		672.4
(2.7)
P 		117.1
(-3)
P 		580
B 647.5
(3)
P 		624
(2.7)
P 		638
(2.9)
P 		189.6
(-3)
P 		458
C 619.3
(1)
P 		664.6
(1.4)
P 		855.7
(3)
P 		155.3
(-3)
P 		700
avr 654.6
(2.3) 		635.2
(2.1) 		722
(3) 		154
(-3) 		568

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1307
1 2 3 4 5 6 range
A 363.6
(-2.8)
P 		728.6
(-0.4)
P 		338
(-3)
P 		642.4
(-1)
P 		1236.1
(3)
P 		841
(0.4)
P 		898
B 498.1
(-2.4)
P 		716.1
(-1.3)
P 		359.5
(-3)
P 		698.6
(-1.4)
P 		1645.4
(3)
P 		1091.2
(0.4)
P 		1286
C 627.4
(-2.3)
P 		591.8
(-2.6)
P 		543
(-3)
P 		540.3
(-3)
P 		1283.6
(3)
P 		955.7
(0.4)
P 		743
avr 496.4
(-2.5) 		678.8
(-1.4) 		413.5
(-3) 		627.1
(-1.7) 		1388.4
(3) 		962.6
(0.4) 		975
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173516_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22917
Sequence Type Exemplar sequence
Representative Public ID C68938 NCBI
Target Description C68938 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M01E11.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68938 /WB_GENE_ID=M01E11.4 /WP=CE12294 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk298a1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059229 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) (pqn-52) mRNA, complete cds. 11/11 None
M01E11.4b ENSEMBL cdna:known chromosome:CEL140:I:5568360:5570080:-1 gene:M01E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172210 3 1 NM_001026404 185517_at (11)
NM_059229 173516_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5568407-5570081(-) 100.0 100.0
Public Domain and Genome References
Ensembl M01E11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK77614 Hypothetical protein M01E11.4b [Caenorhabditis elegans] ref|NP_491630.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 1.0E-127
blast AAK77613 Hypothetical protein M01E11.4a [Caenorhabditis elegans] ref|NP_491629.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 1.0E-119
blast T29321 hypothetical protein M01E11.4 - Caenorhabditis elegans 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:173516_AT
ctcaaccccctatgattgcaattttcccccactaaattcacgcaatactacccgttgatc
atgtcttcccaaatacatatagacacacagaagcttatacgccaggagcgtttcctatct
ttttaattttcaaatatttaaaattgtacaatttcgcttattttctagaatcccacctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAACCCCCTATGATTGCAATTTT 29 229 929 Antisense
TGCAATTTTCCCCCACTAAATTCAC 487 573 945 Antisense
CCCCCACTAAATTCACGCAATACTA 105 261 954 Antisense
TTCACGCAATACTACCCGTTGATCA 278 687 965 Antisense
AATACTACCCGTTGATCATGTCTTC 40 173 972 Antisense
GATCATGTCTTCCCAAATACATATA 289 421 985 Antisense
GACACACAGAAGCTTATACGCCAGG 70 367 1010 Antisense
ATACGCCAGGAGCGTTTCCTATCTT 547 23 1025 Antisense
CAGGAGCGTTTCCTATCTTTTTAAT 702 207 1031 Antisense
AATTGTACAATTTCGCTTATTTTCT 190 179 1070 Antisense
CGCTTATTTTCTAGAATCCCACCTC 48 255 1083 Antisense
Sequence Source Affymetrix Proprietary Database