[Home] | [Total List]

[173514_s_at]

Description C71050 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K12C11.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71050 /WB_GENE_ID=K12C11.1 /WP=CE26819 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439b9 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 31      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 31      6grp_total > 33      4grp_total > 56      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1244
1 2 3 4 range
A 1220.1
(-3)
P 		1959.9
(3)
P 		1699.8
(0.9)
P 		1218.2
(-3)
P 		742
B 1451.7
(-1.3)
P 		1749.9
(0.2)
P 		2339.6
(3)
P 		1095.9
(-3)
P 		1244
C 1241.1
(-2.2)
P 		1607.2
(0.8)
P 		1884.9
(3)
P 		1141.9
(-3)
P 		743
avr 1304.3
(-1.9) 		1772.3
(1.5) 		1974.8
(3) 		1152
(-3) 		823

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 798
1 2 3 4 5 6 range
A 1067.5
(2.3)
P 		1115.4
(3)
P 		1020.7
(1.6)
P 		884.1
(-0.5)
P 		730.7
(-2.8)
P 		720.2
(-3)
P 		395
B 1242.7
(1.1)
P 		1159.9
(0.1)
P 		1404.4
(3)
P 		999.1
(-1.8)
P 		1036.8
(-1.3)
P 		893.4
(-3)
P 		511
C 922
(-0.6)
P 		1211.3
(1.6)
P 		1402.2
(3)
P 		606.4
(-3)
P 		961.1
(-0.3)
P 		741.1
(-2)
P 		796
avr 1077.4
(0.6) 		1162.2
(1.6) 		1275.8
(3) 		829.9
(-2.4) 		909.5
(-1.5) 		784.9
(-3) 		491
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 479
1 2 3 4 range
A 444.2
(3)
P 		425.4
(2.6)
P 		444.4
(3)
P 		178.3
(-3)
P 		266
B 462.9
(1.5)
P 		432.2
(0.9)
P 		542.1
(3)
P 		233.5
(-3)
P 		309
C 410.8
(-0.2)
P 		462.1
(0.5)
P 		656.9
(3)
P 		192.5
(-3)
P 		464
avr 439.3
(1.1) 		439.9
(1.1) 		547.8
(3) 		201.4
(-3) 		346

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 196.8
(-2.4)
P 		396.7
(3)
P 		222.3
(-1.7)
P 		224.2
(-1.7)
P 		220.5
(-1.8)
P 		175.4
(-3)
P 		221
B 432.4
(3)
P 		386.1
(1.3)
P 		341
(-0.3)
P 		264.6
(-3)
P 		421.3
(2.6)
P 		333.1
(-0.6)
P 		168
C 341.7
(2.3)
P 		369.6
(3)
P 		356.9
(2.7)
P 		122
(-3)
P 		311
(1.6)
P 		248.1
(0.1)
P 		248
avr 323.6
(1) 		384.1
(3) 		306.7
(0.4) 		203.6
(-3) 		317.6
(0.8) 		252.2
(-1.4) 		181
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173514_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22475
Sequence Type Exemplar sequence
Representative Public ID C71050 NCBI
Target Description C71050 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K12C11.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C71050 /WB_GENE_ID=K12C11.1 /WP=CE26819 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk439b9 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058442(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058442 NCBI Caenorhabditis elegans K12C11.1 (K12C11.1) mRNA, complete cds. 9/11 A 
K12C11.1.1 ENSEMBL cdna:known chromosome:CEL140:I:1341221:1344693:-1 gene:K12C11.1 9/11 None
K12C11.1.2 ENSEMBL cdna:known chromosome:CEL140:I:1341236:1344695:-1 gene:K12C11.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1341292-1341930(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12C11.1
Entrez Gene 171704 Entrez gene
SwissProt O44995 EMBL-EBI
WormBase CE26819 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:253719_AT Xaa-Pro dipeptidase, putative / prolidase, putative / imidodipeptidase, putative at
CANINE_2:CFAAFFX.11958.1.S1_S_AT similar to Xaa-Pro dipeptidase (X-Pro dipeptidase) (Proline dipeptidase) (Prolidase) (Imidodipeptidase) cfa
DROSOPHILA_2:1640743_AT Dipeptidase C dm
DROSGENOME1:153596_AT Dipeptidase C dm
HG-U133_PLUS_2:202108_AT peptidase D hs
HG-U133A:202108_AT peptidase D hs
HG-FOCUS:202108_AT peptidase D hs
HG-U133A_2:202108_AT peptidase D hs
HU35KSUBC:RC_AA135558_S_AT peptidase D hs
HUGENEFL:J04605_AT peptidase D hs
U133_X3P:G4557834_3P_AT peptidase D hs
HG-U95AV2:36109_AT peptidase D hs
HG-U95B:44438_AT Peptidase D hs
HU35KSUBB:RC_W87536_AT Peptidase D hs
MG-U74AV2:101042_F_AT peptidase 4 mm
MU11KSUBA:U51014_S_AT peptidase 4 mm
MOE430A:1416712_AT peptidase 4 mm
MOUSE430A_2:1416712_AT peptidase 4 mm
MOUSE430_2:1416712_AT peptidase 4 mm
MU19KSUBB:TC26248_S_AT Peptidase 4 (Pep4), mRNA mm
RG-U34B:RC_AA899762_G_AT peptidase D rn
RG-U34B:RC_AA899762_AT peptidase D rn
RG-U34C:RC_AI233224_AT peptidase D rn
RAE230A:1370699_A_AT peptidase D rn
RAT230_2:1370699_A_AT peptidase D rn
RAE230A:1390304_AT Peptidase D rn
RAT230_2:1390304_AT Peptidase D rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8233 peptidase activity inferred from electronic annotation QuickGO AmiGO
8235 metalloexopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18972 Hypothetical protein K12C11.1 [Caenorhabditis elegans] ref|NP_490843.1| K12C11.1 [Caenorhabditis elegans] 0.0
blast CAE69085 Hypothetical protein CBG15103 [Caenorhabditis briggsae] emb|CAE74545.1| Hypothetical protein CBG22302 [Caenorhabditis briggsae] 0.0
blast AAH54994 MGC64570 protein [Xenopus laevis] 1.0E-140
Protein Domains
Database ID Description E-Value
Pfam IPR007865 EMBL-EBI Peptidase M24, X-Pro dipeptidase/aminopeptidase N-terminal 1.8E-21
Pfam IPR000994 EMBL-EBI Peptidase M24 3.9E-25
Sequence
Target Sequence 
>C. ELEGANS:173514_S_AT
aaaatcgaggcggcagagctctgcaaccgtaaaaattgtggaaaagctgactttttcagt
caaaactgtcccacgggggcaatcaccatcgaacccggctgctatttcattgatttcctg
ctcaacgaggcgctcgccgacccgaaaaagagcgaattcctcgtcaaatccgaaatcgac
aagtaccgcggatcaggcggcgtccgtatcgaggatgacgtcatcattcgtgcttctggt
aacgagaatctgagcgatcttccacgaaccgtcgaggagatcgagaacttcatggctagt
ggaggcgaatggacggagaaggtcatcgaatctcgtgtctctgatttcttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCGAGGCGGCAGAGCTCTGCA 357 133 65 Antisense
TTTTCAGTCAAAACTGTCCCACGGG 93 667 117 Antisense
AACCCGGCTGCTATTTCATTGATTT 286 147 156 Antisense
ATTTCATTGATTTCCTGCTCAACGA 62 17 168 Antisense
GAGCGAATTCCTCGTCAAATCCGAA 196 387 214 Antisense
CAAGTACCGCGGATCAGGCGGCGTC 250 185 244 Antisense
ACGTCATCATTCGTGCTTCTGGTAA 236 95 282 Antisense
ACGAGAATCTGAGCGATCTTCCACG 554 93 306 Antisense
GATCTTCCACGAACCGTCGAGGAGA 73 421 320 Antisense
GAGAACTTCATGGCTAGTGGAGGCG 124 393 347 Antisense
GAATCTCGTGTCTCTGATTTCTTGT 360 329 392 Antisense
Sequence Source Affymetrix Proprietary Database