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[173513_s_at]

Description C43389 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18E9.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43389 /WB_GENE_ID=C18E9.3B /WP=CE20519 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk326f8 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 86      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 96      6grp_total > 78      4grp_total > 05      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 557
1 2 3 4 range
A 845.2
(0)
P 		770.5
(-2.2)
P 		745.3
(-3)
P 		942.7
(3)
P 		197
B 933
(-0.8)
P 		727.7
(-3)
P 		884.1
(-1.3)
P 		1282.6
(3)
P 		555
C 925.7
(0.1)
P 		725.6
(-3)
P 		822.9
(-1.5)
P 		1107.6
(3)
P 		382
avr 901.3
(-0.4) 		741.3
(-3) 		817.4
(-1.8) 		1111
(3) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 692
1 2 3 4 5 6 range
A 744.4
(-0.8)
P 		739.3
(-0.9)
P 		837.3
(0.5)
P 		582.1
(-3)
P 		876.6
(1)
P 		1022.7
(3)
P 		441
B 818.2
(-2)
P 		747.2
(-3)
P 		922.1
(-0.5)
P 		797.4
(-2.3)
P 		829.2
(-1.8)
P 		1167.6
(3)
P 		420
C 576.1
(-3)
P 		750.5
(-1.5)
P 		695.6
(-2)
P 		632.1
(-2.5)
P 		774.1
(-1.3)
P 		1268
(3)
P 		692
avr 712.9
(-2.5) 		745.7
(-2.1) 		818.3
(-1.2) 		670.5
(-3) 		826.6
(-1.1) 		1152.8
(3) 		482
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 307.7
(3)
P 		167.2
(-2)
P 		194.8
(-1)
P 		138
(-3)
P 		170
B 297.5
(3)
P 		179.7
(-3)
P 		204.9
(-1.7)
P 		273.3
(1.8)
P 		118
C 306.4
(3)
P 		208.6
(-1.9)
P 		286.8
(2)
P 		186.8
(-3)
P 		120
avr 303.9
(3) 		185.2
(-3) 		228.8
(-0.8) 		199.4
(-2.3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 137.2
(-3)
P 		262.9
(2.9)
P 		182.3
(-0.9)
P 		147.6
(-2.5)
P 		264.5
(3)
P 		249
(2.3)
P 		127
B 284.7
(-1)
P 		248.7
(-2)
P 		223.9
(-2.7)
P 		211.2
(-3)
P 		336.9
(0.4)
P 		435.4
(3)
P 		224
C 213.5
(-1.3)
P 		229
(-0.9)
P 		177.1
(-2)
P 		127.1
(-3)
P 		250.5
(-0.5)
P 		424.5
(3)
P 		297
avr 211.8
(-1.6) 		246.9
(-0.5) 		194.4
(-2.1) 		162
(-3) 		284
(0.5) 		369.6
(3) 		208
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173513_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23414
Sequence Type Exemplar sequence
Representative Public ID C43389 NCBI
Target Description C43389 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=C18E9.3B /5_PRIME_EXT_DB=WormBase Gene ID /GB=C43389 /WB_GENE_ID=C18E9.3B /WP=CE20519 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk326f8 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063508(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063508 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) (pqn-14) mRNA, complete cds. 11/11 None
C18E9.3a ENSEMBL cdna:known chromosome:CEL140:II:8966831:8969383:-1 gene:C18E9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174430 3 1 NM_063508 173513_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8966900-8969381(-) 96.36 100.0
Public Domain and Genome References
Ensembl C18E9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93854 Hypothetical protein C18E9.3a [Caenorhabditis elegans] ref|NP_495909.2| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
blast CAA93860 Hypothetical protein C18E9.3b [Caenorhabditis elegans] ref|NP_495910.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
blast CAI79119 Hypothetical protein C18E9.3c [Caenorhabditis elegans] ref|NP_001021977.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-14) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495909.2 1 31-53
C18E9.3a 1 31-53
Sequence
Target Sequence 
>C. ELEGANS:173513_S_AT
atcggcctcaatagtttgttattccattctacgaacactctatagacaattcatgcttta
accacgtctttttgatgtgctgtgatggtcatcttttcacatttatctcccttttcttgt
tccatcagtccgattcggaattgtgttaatcaacacgggtcgtacttcctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGCCTCAATAGTTTGTTATTCC 630 33 1857 Antisense
GTTATTCCATTCTACGAACACTCTA 76 449 1874 Antisense
GAACACTCTATAGACAATTCATGCT 486 349 1889 Antisense
ACAATTCATGCTTTAACCACGTCTT 99 115 1902 Antisense
CATGCTTTAACCACGTCTTTTTGAT 223 209 1908 Antisense
AACCACGTCTTTTTGATGTGCTGTG 310 147 1916 Antisense
GATGTGCTGTGATGGTCATCTTTTC 464 409 1930 Antisense
TGGTCATCTTTTCACATTTATCTCC 663 551 1942 Antisense
TCTTGTTCCATCAGTCCGATTCGGA 427 615 1971 Antisense
GTCCGATTCGGAATTGTGTTAATCA 572 475 1984 Antisense
TAATCAACACGGGTCGTACTTCCTC 175 631 2003 Antisense
Sequence Source Affymetrix Proprietary Database