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[173512_at]

Description CEC2312 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09231 /WB_GENE_ID=T01D3.5 /WP=CE12962 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk158f11 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 29      4grp_high_8_8 > 07      6grp_highest_nonorm > 88      6grp_total > 69      4grp_total > 06      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1242
1 2 3 4 range
A 1322.4
(2)
P 		783.5
(-3)
P 		1185.9
(0.8)
P 		1425.3
(3)
P 		642
B 1565.4
(-0)
P 		1117.4
(-3)
P 		1435.3
(-0.9)
P 		2025.3
(3)
P 		908
C 1028.8
(-3)
P 		1045.2
(-2.8)
P 		1157
(-1.8)
P 		1658
(3)
P 		629
avr 1305.5
(-0.3) 		982
(-3) 		1259.4
(-0.7) 		1702.9
(3) 		721

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1658
1 2 3 4 5 6 range
A 1144.4
(-1.5)
P 		1140.6
(-1.5)
P 		965.1
(-3)
P 		1016.3
(-2.6)
P 		1451.3
(1)
P 		1686.7
(3)
P 		722
B 1533.3
(0.3)
P 		1055.1
(-1.4)
P 		608.5
(-3)
P 		1191.7
(-0.9)
P 		1397.1
(-0.1)
P 		2266.9
(3)
P 		1658
C 1093.9
(-0.7)
P 		1338.8
(1.2)
P 		916.9
(-2)
P 		782.2
(-3)
P 		1305.9
(0.9)
P 		1585.9
(3)
P 		804
avr 1257.2
(-0.5) 		1178.2
(-0.9) 		830.2
(-3) 		996.7
(-2) 		1384.8
(0.3) 		1846.5
(3) 		1016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 329
1 2 3 4 range
A 481.5
(3)
P 		170.1
(-3)
P 		310
(-0.3)
P 		208.6
(-2.3)
P 		311
B 499.2
(3)
P 		276
(-3)
P 		332.6
(-1.5)
P 		431.6
(1.2)
P 		223
C 340.6
(-0)
P 		300.5
(-2)
P 		403.2
(3)
P 		279.6
(-3)
P 		124
avr 440.4
(3) 		248.9
(-3) 		348.6
(0.1) 		306.6
(-1.2) 		192

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 211
(-3)
P 		405.6
(2.1)
P 		210.2
(-3)
P 		257.8
(-1.7)
P 		437.9
(3)
P 		410.7
(2.3)
P 		228
B 533.5
(0.3)
P 		351.2
(-1.3)
P 		147.8
(-3)
P 		315.7
(-1.6)
P 		567.6
(0.6)
P 		845.3
(3)
P 		698
C 405.5
(1)
P 		408.5
(1)
P 		233.4
(-1.8)
P 		157.3
(-3)
P 		422.6
(1.3)
P 		530.9
(3)
P 		374
avr 383.3
(-0.2) 		388.4
(-0.1) 		197.1
(-3) 		243.6
(-2.3) 		476
(1.2) 		595.6
(3) 		399
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173512_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25375
Sequence Type Exemplar sequence
Representative Public ID CEC2312 NCBI
Target Description CEC2312 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T01D3.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C09231 /WB_GENE_ID=T01D3.5 /WP=CE12962 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk158f11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073992(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073992 NCBI Caenorhabditis elegans T01D3.5 (T01D3.5) mRNA, complete cds. 11/11 None
T01D3.5 ENSEMBL cdna:known chromosome:CEL140:V:13715596:13717863:-1 gene:T01D3.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13715606-13717861(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01D3.5
Entrez Gene 179862 Entrez gene
SwissProt Q9XVJ5 EMBL-EBI
WormBase CE12962 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.25353.1.S1_AT similar to solute carrier family 39 (zinc transporter), member 9 cfa
DROSOPHILA_2:1626088_AT dm
DROSGENOME1:150976_AT dm
CHICKEN:GGA.2489.1.S1_S_AT solute carrier family 39 (zinc transporter), member 9 gga
CHICKEN:GGAAFFX.12788.1.S1_S_AT solute carrier family 39 (zinc transporter), member 9 gga
HG-U133_PLUS_2:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:217859_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:AA404214_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBC:RC_N75308_S_AT solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBD:RC_AA456641_AT solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:G8922967_3P_A_AT solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:HS.18104.0.S2_3P_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:222445_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133B:222445_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95B:45248_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95B:56089_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U95E:74935_AT solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:216009_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:U92027_AT Solute carrier family 39 (zinc transporter), member 9 hs
HUGENEFL:U92027_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBC:RC_F02232_AT Solute carrier family 39 (zinc transporter), member 9 hs
U133_X3P:HS.159211.0.S1_3P_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A_2:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133A:216011_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133_PLUS_2:242115_AT Solute carrier family 39 (zinc transporter), member 9 hs
HG-U133B:242115_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBA:D82557_AT Solute carrier family 39 (zinc transporter), member 9 hs
HU35KSUBD:RC_AA190884_AT Solute carrier family 39 (zinc transporter), member 9 hs
MOUSE430_2:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MOE430A:1421249_AT solute carrier family 39 (zinc transporter), member 9 mm
MU11KSUBA:AA028499_S_AT solute carrier family 39 (zinc transporter), member 9 mm
MG-U74AV2:102232_AT solute carrier family 39 (zinc transporter), member 9 mm
MOE430A:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430_2:1452765_AT solute carrier family 39 (zinc transporter), member 9 mm
MOUSE430A_2:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MOE430A:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MOUSE430_2:1421250_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
MU19KSUBA:TC22816_AT PREDICTED: solute carrier family 39 (zinc transporter), member 9 [Mus musculus], mRNA sequence mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
30001 metal ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46873 metal ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB03256 Hypothetical protein T01D3.5 [Caenorhabditis elegans] ref|NP_506393.1| T01D3.5 [Caenorhabditis elegans] 0.0
blast CAE66258 Hypothetical protein CBG11502 [Caenorhabditis briggsae] 1.0E-162
blast XP_392671 PREDICTED: similar to ENSANGP00000016834 [Apis mellifera] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003689 EMBL-EBI Zinc transporter ZIP 6.4E-76
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506393.1 7 4-26,33-55,171-193,206-228,238-260,273-295,305-324
T01D3.5 7 4-26,33-55,171-193,206-228,238-260,273-295,305-324
Sequence
Target Sequence 
>C. ELEGANS:173512_AT
ggtcactctcattgagcatttgaatagtattttcatccgtgtgtttgtgtatgtaggctt
tatcatcatcacagagtttatcaacattatcacttatcaatgttatccgcgtttcattgt
gattaatatctcttactttcctttctagctgtttttcttgtctgttttcctttccccact
tctgtttctctgcttatgggtatttggctactttcctgtacatacaaactatttagcatt
tctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTCACTCTCATTGAGCATTTGAAT 37 505 1145 Antisense
ATAGTATTTTCATCCGTGTGTTTGT 581 21 1168 Antisense
GTGTGTTTGTGTATGTAGGCTTTAT 679 487 1183 Antisense
GTAGGCTTTATCATCATCACAGAGT 71 457 1197 Antisense
ATCACTTATCAATGTTATCCGCGTT 656 27 1233 Antisense
GTTATCCGCGTTTCATTGTGATTAA 332 447 1246 Antisense
CTAGCTGTTTTTCTTGTCTGTTTTC 128 225 1289 Antisense
TTCTGTTTCTCTGCTTATGGGTATT 230 695 1324 Antisense
TGGGTATTTGGCTACTTTCCTGTAC 375 553 1341 Antisense
TGGCTACTTTCCTGTACATACAAAC 407 543 1349 Antisense
TACAAACTATTTAGCATTTCTTTCA 263 643 1367 Antisense
Sequence Source Affymetrix Proprietary Database