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[173511_at]

Description C68033 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H37A05.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68033 /WB_GENE_ID=H37A05.1 /WP=CE19946 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk275b1 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 86      6grp_total > 69      4grp_total > 06      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2389
1 2 3 4 range
A 2109.4
(-0.1)
P 		1141.8
(-2.7)
P 		1012.4
(-3)
P 		3321.3
(3)
P 		2309
B 2524.5
(1.1)
P 		932.8
(-3)
P 		950.8
(-3)
P 		3249
(3)
P 		2316
C 2060.3
(1)
P 		1052.9
(-3)
P 		1052.1
(-3)
P 		2560.3
(3)
P 		1508
avr 2231.4
(0.6) 		1042.5
(-2.9) 		1005.1
(-3) 		3043.5
(3) 		2038

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 908.3
(0.5)
P 		1009.2
(1.8)
P 		881.8
(0.2)
P 		639.4
(-3)
P 		1098.5
(3)
P 		976.8
(1.4)
P 		459
B 1111.5
(-0.1)
P 		1165.7
(0.9)
P 		1245.7
(2.2)
P 		936.8
(-3)
P 		980.1
(-2.3)
P 		1292.6
(3)
P 		356
C 1189.1
(1.2)
P 		1010.9
(-1)
P 		1011.8
(-1)
P 		850.7
(-3)
P 		1075.7
(-0.2)
P 		1337.8
(3)
P 		487
avr 1069.6
(1) 		1061.9
(0.9) 		1046.4
(0.6) 		809
(-3) 		1051.4
(0.7) 		1202.4
(3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 585
1 2 3 4 range
A 768
(3)
P 		247.9
(-3)
P 		264.7
(-2.8)
P 		486.2
(-0.3)
P 		520
B 805
(3)
P 		230.4
(-2.9)
P 		220.3
(-3)
P 		692.4
(1.8)
P 		585
C 682
(3)
P 		302.7
(-3)
P 		366.7
(-2)
P 		431.7
(-1)
P 		379
avr 751.7
(3) 		260.3
(-3) 		283.9
(-2.7) 		536.8
(0.4) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 167.4
(-2.8)
P 		358.9
(3)
P 		192
(-2.1)
P 		162.2
(-3)
P 		331.5
(2.2)
P 		237.8
(-0.7)
P 		197
B 386.8
(0.6)
P 		388
(0.6)
P 		302.5
(-1.6)
P 		248.1
(-3)
P 		398.2
(0.9)
P 		482
(3)
P 		234
C 440.7
(2.8)
P 		308.5
(-0)
P 		257.5
(-1.1)
P 		171.1
(-3)
P 		348.1
(0.8)
P 		447.8
(3)
P 		277
avr 331.6
(1.2) 		351.8
(1.9) 		250.7
(-1.3) 		193.8
(-3) 		359.3
(2.1) 		389.2
(3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25379
Sequence Type Exemplar sequence
Representative Public ID C68033 NCBI
Target Description C68033 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=H37A05.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C68033 /WB_GENE_ID=H37A05.1 /WP=CE19946 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk275b1 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073979(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073979 NCBI Caenorhabditis elegans H37A05.1 (H37A05.1) mRNA, complete cds. 11/11 None
H37A05.1 ENSEMBL cdna:known chromosome:CEL140:V:13652897:13656721:-1 gene:H37A05.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13652907-13656594(-) 98.92 100.0
Public Domain and Genome References
Gene Title
Ensembl H37A05.1
Entrez Gene 179853 Entrez gene
SwissProt Q9XXT5 EMBL-EBI
WormBase CE19946 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249168_AT lipin family protein at
CANINE_2:CFAAFFX.28215.1.S1_S_AT similar to Lipin-2 cfa
CHICKEN:GGAAFFX.12825.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.1.S1_S_AT lipin 2 gga
CHICKEN:GGAAFFX.9429.4.S1_AT lipin 2 gga
HG-U133A:202459_S_AT lipin 2 hs
HG-U133A_2:202459_S_AT lipin 2 hs
HG-U133_PLUS_2:202459_S_AT lipin 2 hs
HG-U133A:202460_S_AT lipin 2 hs
HG-U133_PLUS_2:202460_S_AT lipin 2 hs
HG-U133A_2:202460_S_AT lipin 2 hs
HU35KSUBB:RC_T95515_S_AT lipin 2 hs
HU35KSUBC:RC_R01450_AT lipin 2 hs
HUGENEFL:D87436_AT lipin 2 hs
U133_X3P:G7662021_3P_A_AT lipin 2 hs
U133_X3P:HS.166318.0.A1_3P_A_AT lipin 2 hs
HG-U95AV2:40447_AT lipin 2 hs
HG-U95B:48132_AT lipin 2 hs
HG-U133_PLUS_2:244799_S_AT Lipin 2 hs
HG-U133B:244799_S_AT Lipin 2 hs
HG-U95C:56874_AT Lipin 2 hs
HG-U95C:58228_AT Lipin 2 hs
HG-U95E:73373_AT Lipin 2 hs
HU35KSUBB:RC_T70318_AT Lipin 2 hs
U133_X3P:HS.246780.0.A1_3P_AT Lipin 2 hs
MU11KSUBA:AA270915_S_AT lipin 2 mm
MG-U74AV2:96806_AT lipin 2 mm
MG-U74BV2:110009_AT lipin 2 mm
MG-U74AV2:161165_F_AT lipin 2 mm
MOE430A:1452836_AT lipin 2 mm
MOUSE430A_2:1452836_AT lipin 2 mm
MOUSE430_2:1452836_AT lipin 2 mm
MOE430A:1460290_AT lipin 2 mm
MOUSE430A_2:1460290_AT lipin 2 mm
MOUSE430_2:1460290_AT lipin 2 mm
MOE430A:1452837_AT lipin 2 mm
MOUSE430A_2:1452837_AT lipin 2 mm
MOUSE430_2:1452837_AT lipin 2 mm
MOE430B:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MOUSE430_2:1446316_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
MU19KSUBB:TC34003_S_AT Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211) mm
RAE230B:1396398_AT lipin 2 (predicted) rn
RAT230_2:1396398_AT lipin 2 (predicted) rn
RAE230B:1391378_AT Lipin 2 (predicted) rn
RAT230_2:1391378_AT Lipin 2 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA16154 Hypothetical protein H37A05.1 [Caenorhabditis elegans] ref|NP_506380.1| H37A05.1 [Caenorhabditis elegans] 0.0
blast CAE66268 Hypothetical protein CBG11512 [Caenorhabditis briggsae] 0.0
blast CAE66269 Hypothetical protein CBG11513 [Caenorhabditis briggsae] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR007651 EMBL-EBI Lipin, N-terminal conserved region 8.9E-72
Sequence
Target Sequence 
>C. ELEGANS:173511_AT
aagtatctaaacacccgatattctcatttcttcccattctcctacaaaactcggtttttt
tttccaaaaactccctttgttttctcgttcttttttttgctcgttttttttgttatcaga
gttcaatgcatttattatattcgctttctctaccgcaccgccttcaacctttttttatta
taattattaatgtttttttccctgattttttgtttcgactctcaaaatatgtacattgca
gttgaatgcttgtacatacagttttgttgcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTATCTAAACACCCGATATTCTC 106 155 2476 Antisense
TAAACACCCGATATTCTCATTTCTT 137 641 2483 Antisense
TTCCCATTCTCCTACAAAACTCGGT 36 697 2506 Antisense
TGTTATCAGAGTTCAATGCATTTAT 511 561 2586 Antisense
GCATTTATTATATTCGCTTTCTCTA 225 309 2603 Antisense
TTATTATATTCGCTTTCTCTACCGC 423 679 2607 Antisense
TTCCCTGATTTTTTGTTTCGACTCT 583 697 2673 Antisense
GTTTCGACTCTCAAAATATGTACAT 300 451 2687 Antisense
TGTACATTGCAGTTGAATGCTTGTA 411 555 2705 Antisense
GCAGTTGAATGCTTGTACATACAGT 92 313 2713 Antisense
CTTGTACATACAGTTTTGTTGCACC 79 219 2724 Antisense
Sequence Source Affymetrix Proprietary Database