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[173507_s_at]

Description g5441307 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F43C9.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F43C9.4 /WP=CE28324 /CHR=X /FEA=Genomic Cluster /GEN=mig-13 /DEF=guidance protein MIG-13; LDL-receptor class repeats; C1R-C1S-like repeats
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_cgc > 19      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 120.5
(1.5)
P 		69.9
(-2.7)
P 		65.8
(-3)
P 		139.3
(3)
P 		74
B 121.3
(0.6)
P 		90.5
(-3)
P 		100.2
(-1.9)
P 		141.8
(3)
P 		51
C 102.7
(0.7)
P 		72.4
(-3)
P 		82.6
(-1.7)
P 		121.2
(3)
P 		49
avr 114.8
(1) 		77.6
(-3) 		82.9
(-2.4) 		134.1
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 90
(-2)
P 		99.7
(-1.3)
P 		159.1
(3)
P 		76.8
(-3)
P 		125.2
(0.5)
P 		131.6
(1)
P 		82
B 162.5
(2.5)
P 		139.6
(1.4)
P 		53.5
(-3)
P 		129.7
(0.9)
P 		146.1
(1.7)
P 		171.8
(3)
P 		118
C 120.7
(2.7)
P 		120.8
(2.7)
P 		52.5
(-3)
P 		89.6
(0.1)
P 		114.1
(2.1)
P 		124.7
(3)
P 		72
avr 124.4
(1) 		120
(0.5) 		88.4
(-3) 		98.7
(-1.9) 		128.5
(1.4) 		142.7
(3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 43.9
(3)
P 		15.2
(-3)
P 		17.2
(-2.6)
P 		20.4
(-1.9)
P 		29
B 38.7
(3)
P 		22.4
(-3)
P 		23.2
(-2.7)
P 		30.2
(-0.1)
P 		16
C 34
(3)
P 		20.8
(-2.8)
P 		28.8
(0.7)
P 		20.4
(-3)
P 		14
avr 38.9
(3) 		19.5
(-3) 		23.1
(-1.9) 		23.7
(-1.7) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 16.6
(-3)
P 		35.5
(2.3)
P 		34.6
(2.1)
P 		19.5
(-2.2)
P 		37.8
(3)
P 		32
(1.4)
P 		21
B 56.5
(2.1)
P 		46.5
(0.9)
P 		13
(-3)
P 		34.3
(-0.5)
P 		59.4
(2.4)
P 		64.1
(3)
P 		51
C 44.7
(3)
P 		36.8
(1.5)
P 		13.4
(-3)
P 		18
(-2.1)
P 		36.9
(1.5)
P 		41.7
(2.4)
P 		31
avr 39.3
(1.5) 		39.6
(1.5) 		20.3
(-3) 		23.9
(-2.2) 		44.7
(2.7) 		45.9
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173507_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25884
Sequence Type Exemplar sequence
Representative Public ID 5441307 NCBI
Target Description g5441307 /REP_DB=GenBank Identifier /5_PRIME_EXT_ID=F43C9.4 /5_PRIME_EXT_DB=WormBase Gene ID /WB_GENE_ID=F43C9.4 /WP=CE28324 /CHR=X /FEA=Genomic Cluster /GEN=mig-13 /DEF=guidance protein MIG-13; LDL-receptor class repeats; C1R-C1S-like repeats
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029489 NCBI Caenorhabditis elegans abnormal cell MIGration family member (mig-13) (mig-13) mRNA, complete cds. 11/11 None
F43C9.4a ENSEMBL cdna:known chromosome:CEL140:X:4796116:4800096:-1 gene:F43C9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180755 2 1 NM_001029489 173507_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4796127-4799613(-) 100.0 100.0
Public Domain and Genome References
Ensembl F43C9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81470 Abnormal cell migration protein 13, isoform a [Caenorhabditis elegans] ref|NP_001024660.1| abnormal cell MIGration family member (mig-13) [Caenorhabditis elegans] gb|AAD43178.1| guidance protein MIG-13 [Caenorhabditis elegans] 0.0
blast AAP82652 Abnormal cell migration protein 13, isoform b [Caenorhabditis elegans] ref|NP_001024661.1| abnormal cell MIGration family member (mig-13) [Caenorhabditis elegans] 0.0
blast CAE68651 Hypothetical protein CBG14545 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 2.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024660.1 1 239-261
F43C9.4a 1 239-261
Sequence
Target Sequence 
>C. ELEGANS:173507_S_AT
gtaatctactctaaaatctgttctttaattttctagcgttctctaacattgtagcatata
gttttcgggttgttatagagcatactgttgtggtatttttttcttcactgagcttttccg
tcacttttttcctctctccacatttgtcccgtcatcctctaatctttccggttattctgt
gttgatatgtatcaatttgaattgtcatattcaaaagtaaggaatgtattcattgctgat
atgatgttgatattatcttctttactgcatcgtgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATCTACTCTAAAATCTGTTCTT 69 463 948 Antisense
GTTCTTTAATTTTCTAGCGTTCTCT 29 441 967 Antisense
TAGCGTTCTCTAACATTGTAGCATA 384 651 981 Antisense
GTAGCATATAGTTTTCGGGTTGTTA 53 457 998 Antisense
GGGTTGTTATAGAGCATACTGTTGT 554 495 1014 Antisense
TACTGTTGTGGTATTTTTTTCTTCA 57 643 1030 Antisense
TTTTTTTCTTCACTGAGCTTTTCCG 542 675 1043 Antisense
CCTCTAATCTTTCCGGTTATTCTGT 472 267 1103 Antisense
CTTTCCGGTTATTCTGTGTTGATAT 393 223 1111 Antisense
GTTGATATTATCTTCTTTACTGCAT 66 439 1193 Antisense
TATCTTCTTTACTGCATCGTGATTT 397 659 1201 Antisense
Sequence Source GenBank