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[173501_s_at]

Description C49807 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M70.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49807 /WB_GENE_ID=M70.4 /WP=CE25960 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk474c11 : 5prime end, single read.
Cluster 6grp_high1_10_10 > 79      4grp_high_8_8 > 11      6grp_total > 89      4grp_total > 21      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 56.7
(-0.8)
P 		41.1
(-3)
A 		58.8
(-0.5)
A 		83.7
(3)
P 		43
B 49.6
(0.9)
P 		60.4
(3)
P 		29
(-3)
A 		53.1
(1.6)
A 		31
C 83.9
(3)
P 		44.5
(-3)
P 		44.5
(-3)
P 		78.5
(2.2)
P 		39
avr 63.4
(1.2) 		48.7
(-2) 		44.1
(-3) 		71.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 108.4
(0)
P 		84.6
(-1.6)
P 		64.3
(-3)
P 		67.9
(-2.8)
P 		70.4
(-2.6)
P 		152.2
(3)
P 		88
B 79
(-0)
P 		84.4
(0.4)
P 		38
(-3)
P 		76.4
(-0.2)
P 		120.2
(3)
P 		87.3
(0.6)
P 		82
C 65.6
(-0.6)
P 		64.4
(-0.7)
P 		73.4
(-0)
P 		35.5
(-3)
A 		111.6
(3)
P 		72.2
(-0.1)
P 		76
avr 84.3
(0.4) 		77.8
(-0.5) 		58.6
(-3) 		59.9
(-2.8) 		100.7
(2.6) 		103.9
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 20.6
(3)
P 		8.9
(-3)
A 		15.4
(0.3)
A 		12.3
(-1.3)
P 		12
B 15.8
(3)
P 		14.9
(2.4)
P 		6.7
(-3)
A 		11.3
(0)
A 		9
C 27.8
(3)
P 		12.8
(-3)
P 		15.5
(-1.9)
P 		13.2
(-2.8)
P 		15
avr 21.4
(3) 		12.2
(-3) 		12.5
(-2.8) 		12.3
(-2.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 20
(-1.4)
P 		30.1
(1.2)
P 		14
(-3)
P 		17.2
(-2.2)
P 		21.2
(-1.1)
P 		37.1
(3)
P 		23
B 27.5
(-0.2)
P 		28.1
(-0.1)
P 		9.2
(-3)
P 		20.2
(-1.3)
P 		48.8
(3)
P 		32.5
(0.5)
P 		40
C 24.3
(0.6)
P 		19.7
(-0.4)
P 		18.7
(-0.6)
P 		7.1
(-3)
A 		36.1
(3)
P 		24.2
(0.5)
P 		29
avr 23.9
(-0.2) 		26
(0.4) 		14
(-3) 		14.8
(-2.8) 		35.4
(3) 		31.3
(1.9) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173501_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25077
Sequence Type Exemplar sequence
Representative Public ID C49807 NCBI
Target Description C49807 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=M70.4 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C49807 /WB_GENE_ID=M70.4 /WP=CE25960 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk474c11 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067782 NCBI Caenorhabditis elegans M70.4 (M70.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000012663 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2253135:2263659:-1 11/11 None
M70.4 ENSEMBL cdna:known chromosome:CEL140:IV:2253016:2263659:-1 gene:M70.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000022304 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:84100-93665(-) 93.56 93.56
chrIV:2253141-2262340(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M70.4
Entrez Gene 177015 Entrez gene
SwissProt Q688B0 EMBL-EBI
WormBase CE37266 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05544 Hypothetical protein M70.4 [Caenorhabditis elegans] ref|NP_500183.2| M70.4 [Caenorhabditis elegans] 0.0
blast CAE68202 Hypothetical protein CBG13870 [Caenorhabditis briggsae] 0.0
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 1.0E-157
blast AAK39361 Hypothetical protein Y73B3A.3 [Caenorhabditis elegans] ref|NP_508074.1| Y73B3A.3 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500183.2 1 5-27
M70.4 1 5-27
GENEFINDER00000012663 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:173501_S_AT
tgagccgtacaaggcggattccactgtggacttggcgctggcttttaactcaaatggctt
catcgacacttctggcgatggtcaaacggtgtatcgcatcaaaaatcatcttccaattgg
atcgtatttaatgaagagagatttgtacgaaaaacatattcggttgagagaagtctgctg
tacggaacgtggcaattgggatctccgtgaatcgatttctctagtgccggcaatgtcacg
tattgaaattcaagttgacgagctggaaaagaaaaatgttctttttcggcggaatcgcac
cgcgagacaacaaaactacctaatcaatacggaattcgagacttctgaagaatatttgac
acatttgaaccaacttgttcagaatacgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCGTACAAGGCGGATTCCACT 144 569 1681 Antisense
GTACAAGGCGGATTCCACTGTGGAC 300 461 1687 Antisense
GGATTCCACTGTGGACTTGGCGCTG 115 509 1696 Antisense
ACTTGGCGCTGGCTTTTAACTCAAA 48 101 1710 Antisense
GGCGCTGGCTTTTAACTCAAATGGC 186 541 1714 Antisense
GGCTTTTAACTCAAATGGCTTCATC 527 537 1720 Antisense
TCAAATGGCTTCATCGACACTTCTG 58 629 1730 Antisense
AAATTCAAGTTGACGAGCTGGAAAA 514 115 1926 Antisense
AATGTTCTTTTTCGGCGGAATCGCA 241 165 1955 Antisense
CTTTTTCGGCGGAATCGCACCGCGA 707 219 1961 Antisense
GAACCAACTTGTTCAGAATACGAAA 632 345 2047 Antisense
Sequence Source Affymetrix Proprietary Database