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[173497_s_at]

Description C69167 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC190.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69167 /WB_GENE_ID=ZC190.7 /WP=CE28156 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311f3 : 5prime end, single read.
Cluster 6grp_total > 95      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 18.4
(-2.2)
A 		63.5
(3)
A 		11.2
(-3)
A 		33.9
(-0.4)
A 		52
B 30.1
(0)
A 		40.9
(3)
A 		35.3
(1.5)
A 		19
(-3)
A 		22
C 31
(0.5)
A 		27.1
(-0.7)
A 		19.3
(-3)
A 		39.4
(3)
A 		20
avr 26.5
(-1.7) 		43.8
(3) 		21.9
(-3) 		30.8
(-0.6) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 74.6
(3)
A 		40.1
(0.1)
A 		2.4
(-3)
A 		37.6
(-0.1)
A 		30.6
(-0.7)
A 		37.1
(-0.1)
M 		72
B 7.6
(-2.7)
A 		5.4
(-3)
A 		12.4
(-2.1)
A 		52.3
(3)
A 		44.5
(2)
A 		44.5
(2)
P 		47
C 8
(-2.8)
A 		5.4
(-3)
A 		25.2
(-1.4)
A 		58.2
(1.2)
A 		81.6
(3)
A 		25.2
(-1.4)
M 		76
avr 30.1
(-0.4) 		17
(-2.4) 		13.3
(-3) 		49.4
(2.6) 		52.2
(3) 		35.6
(0.4) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.7
(-0.9)
A 		13.8
(3)
A 		2.9
(-3)
A 		5
(-1.8)
A 		11
B 9.6
(2.5)
A 		10.1
(3)
A 		8.2
(1.1)
A 		4.1
(-3)
A 		6
C 10.3
(3)
A 		7.8
(-1.1)
A 		6.7
(-2.8)
A 		6.6
(-3)
A 		4
avr 8.9
(1.1) 		10.6
(3) 		5.9
(-2.2) 		5.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 13.8
(2.8)
A 		14.3
(3)
A 		0.5
(-3)
A 		9.5
(0.9)
A 		9.2
(0.8)
A 		9
(0.7)
M 		14
B 2.7
(-2.7)
A 		1.8
(-3)
A 		3
(-2.6)
A 		13.9
(1.5)
A 		18.1
(3)
A 		16.6
(2.4)
P 		16
C 3
(-2.7)
A 		1.7
(-3)
A 		6.4
(-1.9)
A 		11.7
(-0.6)
A 		26.4
(3)
A 		8.5
(-1.3)
M 		25
avr 6.5
(-1.7) 		5.9
(-1.9) 		3.3
(-3) 		11.7
(0.5) 		17.9
(3) 		11.4
(0.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173497_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25277
Sequence Type Exemplar sequence
Representative Public ID C69167 NCBI
Target Description C69167 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=ZC190.7 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C69167 /WB_GENE_ID=ZC190.7 /WP=CE28156 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk311f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072837(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072837 NCBI Caenorhabditis elegans ZC190.7 (ZC190.7) mRNA, complete cds. 10/11 None
SNAP00000000635 ENSEMBL cdna:SNAP chromosome:CEL140:V:8688781:8689434:-1 9/11 None
GENEFINDER00000000645 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8688781:8689434:-1 10/11 None
ZC190.7 ENSEMBL cdna:known chromosome:CEL140:V:8688727:8689418:-1 gene:ZC190.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8688738-8689414(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC190.7
Entrez Gene 179250 Entrez gene
SwissProt O76704 EMBL-EBI
WormBase CE28156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26959 Hypothetical protein ZC190.7 [Caenorhabditis elegans] ref|NP_505238.1| ZC190.7 [Caenorhabditis elegans] 6.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000000635 1 42-64
GENEFINDER00000000645 1 56-78
Sequence
Target Sequence 
>C. ELEGANS:173497_S_AT
gttgcgagaccttattactatcatcgtccagttgtcgttgcaagaccgtattatcgtccc
tattatcattatggttggtatcatcccagctacagcattggaggaaattttcccatggtt
agtttttgggctgtcactgtatggtgtctacataatcattggtgccttcatcttcatcgg
ggtcgttgttgcaattggtttctgcataagagcttgtcgttacaatagatacaacgaaaa
tgcctacaactacaacaatgacatgtatcaaggtgcttatccagctcaatatgctggata
tcaaggagctccaccaccatatgattatcaacaacaggctccagtttatggttaccagca
ggcacctcctccagcctacgacaatcaacaaatgccgccaccagctgccaacaatgagca
accagatccggcgaaaaacgttgaaccaattgctccacaggaacatagtgcacccaaaaa
ggccgcagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCGAGACCTTATTACTATCATC 434 439 40 Antisense
CTATCATCGTCCAGTTGTCGTTGCA 20 225 57 Antisense
GCAAGACCGTATTATCGTCCCTATT 134 321 79 Antisense
ATGGTTGGTATCATCCCAGCTACAG 148 51 110 Antisense
TGGGCTGTCACTGTATGGTGTCTAC 10 555 166 Antisense
TAATCATTGGTGCCTTCATCTTCAT 29 637 192 Antisense
TCATCTTCATCGGGGTCGTTGTTGC 97 621 207 Antisense
CAGGCTCCAGTTTATGGTTACCAGC 77 209 374 Antisense
ACGACAATCAACAAATGCCGCCACC 395 91 417 Antisense
GCCACCAGCTGCCAACAATGAGCAA 520 279 436 Antisense
TAGTGCACCCAAAAAGGCCGCAGCT 111 655 505 Antisense
Sequence Source Affymetrix Proprietary Database