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[173496_s_at]

Description C70423 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T23G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70423 /WB_GENE_ID=T23G7.3 /WP=CE03704 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387f3 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 67      6grp_total > 47      4grp_total > 04      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6451
1 2 3 4 range
A 1579.9
(-1.9)
P 		525.2
(-2.9)
P 		419.6
(-3)
P 		6870.2
(3)
P 		6451
B 1751.3
(-1.8)
P 		519.5
(-3)
P 		484
(-3)
P 		6606.5
(3)
P 		6123
C 1720
(-1.8)
P 		620.9
(-3)
P 		641.8
(-3)
P 		6180.2
(3)
P 		5559
avr 1683.7
(-1.8) 		555.2
(-3) 		515.1
(-3) 		6552.3
(3) 		6037

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 1682.8
(3)
P 		1681.8
(3)
P 		1462.3
(-0.7)
P 		1609.5
(1.8)
P 		1320.6
(-3)
P 		1454
(-0.8)
P 		362
B 1774.1
(-1)
P 		1915.6
(0.8)
P 		1675
(-2.2)
P 		1608.6
(-3)
P 		1641.5
(-2.6)
P 		2098.3
(3)
P 		490
C 2020.5
(3)
P 		1870.6
(1.8)
P 		1420.7
(-1.7)
P 		1665.2
(0.2)
P 		1260.7
(-3)
P 		1977.6
(2.7)
P 		760
avr 1825.8
(2.8) 		1822.7
(2.7) 		1519.3
(-1.5) 		1627.8
(0) 		1407.6
(-3) 		1843.3
(3) 		436
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1298
1 2 3 4 range
A 575.2
(0.1)
P 		114
(-3)
P 		109.7
(-3)
P 		1005.7
(3)
P 		896
B 558.5
(-0.9)
P 		128.3
(-2.9)
P 		112.2
(-3)
P 		1407.8
(3)
P 		1296
C 569.4
(-0.3)
P 		178.5
(-3)
P 		223.7
(-2.7)
P 		1042.1
(3)
P 		864
avr 567.7
(-0.5) 		140.3
(-3) 		148.5
(-3) 		1151.9
(3) 		1012

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 310.2
(-3)
P 		598.1
(3)
P 		318.5
(-2.8)
P 		408.2
(-1)
P 		398.5
(-1.2)
P 		354
(-2.1)
P 		288
B 617.3
(0.4)
P 		637.6
(0.7)
P 		406.7
(-3)
P 		426.1
(-2.7)
P 		666.9
(1.2)
P 		782.5
(3)
P 		376
C 748.9
(3)
P 		570.8
(0.4)
P 		361.6
(-2.6)
P 		334.9
(-3)
P 		408
(-1.9)
P 		662
(1.7)
P 		414
avr 558.8
(1.9) 		602.2
(3) 		362.3
(-3) 		389.7
(-2.3) 		491.1
(0.2) 		599.5
(2.9) 		240
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173496_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23218
Sequence Type Exemplar sequence
Representative Public ID C70423 NCBI
Target Description C70423 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T23G7.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70423 /WB_GENE_ID=T23G7.3 /WP=CE03704 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk387f3 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063554(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063554 NCBI Caenorhabditis elegans T23G7.3 (T23G7.3) mRNA, complete cds. 11/11 None
SNAP00000032783 ENSEMBL cdna:SNAP chromosome:CEL140:II:9165979:9172835:-1 11/11 None
GENEFINDER00000032791 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9165979:9169302:-1 11/11 None
T23G7.3 ENSEMBL cdna:known chromosome:CEL140:II:9165839:9167740:-1 gene:T23G7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9165976-9167708(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T23G7.3
Entrez Gene 174456 Entrez gene
SwissProt Q22705 EMBL-EBI
WormBase CE03704 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12913.1.S1_AT similar to Pin2-interacting protein X1 (TRF1-interacting protein 1) (Liver-related putative tumor suppressor) (67-11-3 protein) cfa
CANINE_2:CFAAFFX.12916.1.S1_S_AT similar to Pin2-interacting protein X1 (TRF1-interacting protein 1) (Liver-related putative tumor suppressor) (67-11-3 protein) cfa
DROSOPHILA_2:1640808_AT dm
DROSGENOME1:153192_AT dm
HG-U133_PLUS_2:223907_S_AT PIN2-interacting protein 1 hs
HG-U133B:223907_S_AT PIN2-interacting protein 1 hs
HU35KSUBD:RC_AA216710_AT PIN2-interacting protein 1 hs
U133_X3P:G10504237_3P_A_AT PIN2-interacting protein 1 hs
HG-U95B:55746_AT PIN2-interacting protein 1 hs
U133_X3P:HS2.352239.1.S1_3P_AT PIN2-interacting protein 1 hs
HG-U133_PLUS_2:1564468_AT PIN2-interacting protein 1 hs
HG-U95B:44402_AT PIN2-interacting protein 1 hs
HU35KSUBB:RC_H20165_AT PIN2-interacting protein 1 hs
MOUSE430_2:1421089_A_AT RIKEN cDNA 2610028A01 gene mm
MOE430A:1421089_A_AT RIKEN cDNA 2610028A01 gene mm
MOUSE430A_2:1421089_A_AT RIKEN cDNA 2610028A01 gene mm
MG-U74BV2:109752_AT RIKEN cDNA 2610028A01 gene mm
MU19KSUBB:TC31125_AT RIKEN cDNA 2610028A01 gene (2610028A01Rik), mRNA mm
RG-U34B:RC_AA924658_AT similar to Pin2-interacting protein X1 rn
RAE230A:1374854_AT similar to Pin2-interacting protein X1 rn
RAT230_2:1374854_AT similar to Pin2-interacting protein X1 rn
RAE230B:1395266_AT Similar to Pin2-interacting protein X1 rn
RAT230_2:1395266_AT Similar to Pin2-interacting protein X1 rn
YEAST_2:1777988_AT Essential protein involved in rRNA and snoRNA maturation; competes with TLC1 RNA for binding to Est2p, suggesting a role in regulation of telomerase; human homolog inhibits telomerase; contains a G-patch RNA interacting domain Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92700 Hypothetical protein T23G7.2a [Caenorhabditis elegans] ref|NP_001022356.1| T23G7.2a [Caenorhabditis elegans] 0.0
blast CAE57888 Hypothetical protein CBG00934 [Caenorhabditis briggsae] 0.0
blast CAE57888 Hypothetical protein CBG00934 [Caenorhabditis briggsae] 1.0E-177
blast CAA92701 Hypothetical protein T23G7.3 [Caenorhabditis elegans] ref|NP_495955.1| T23G7.3 [Caenorhabditis elegans] 1.0E-93
blast CAA92701 Hypothetical protein T23G7.3 [Caenorhabditis elegans] ref|NP_495955.1| T23G7.3 [Caenorhabditis elegans] 3.0E-93
blast CAA92701 Hypothetical protein T23G7.3 [Caenorhabditis elegans] ref|NP_495955.1| T23G7.3 [Caenorhabditis elegans] 4.0E-93
blast CAE57890 Hypothetical protein CBG00936 [Caenorhabditis briggsae] 5.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-16
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 4.3E-16
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.4E-21
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000032783 5 7-26,41-58,90-112,122-144,176-198
GENEFINDER00000032791 3 13-35,40-62,95-117
Sequence
Target Sequence 
>C. ELEGANS:173496_S_AT
tcaaaaattcactcgcgccaaggatacaagtaactacagcgatagccacaaaaaaggaat
tcttggatatggaagactcaaatctgacaatgccgaagagaaaatcgaagaaaaaactga
aaattcatctgtaaaatctgatagttctgatagccaagctgacagtcaagagaaaaagga
gggaaataacactgtcagcaccctatccgtcggtgactatttcgctgcaaaaatggctgc
tttgaaggcaaaacgggaggctgcagctgctaatcagacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAAAATTCACTCGCGCCAAGGAT 640 627 403 Antisense
TTCACTCGCGCCAAGGATACAAGTA 658 685 410 Antisense
AAGTAACTACAGCGATAGCCACAAA 270 157 430 Antisense
CTCAAATCTGACAATGCCGAAGAGA 46 229 479 Antisense
TGATAGTTCTGATAGCCAAGCTGAC 691 563 541 Antisense
TGATAGCCAAGCTGACAGTCAAGAG 49 565 550 Antisense
AAATAACACTGTCAGCACCCTATCC 15 117 586 Antisense
CTATCCGTCGGTGACTATTTCGCTG 371 225 605 Antisense
TCGCTGCAAAAATGGCTGCTTTGAA 403 599 624 Antisense
GGCAAAACGGGAGGCTGCAGCTGCT 9 535 649 Antisense
GAGGCTGCAGCTGCTAATCAGACAG 384 405 659 Antisense
Sequence Source Affymetrix Proprietary Database