[Home] | [Total List]

[173495_at]

Description C66155 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K11G9.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66155 /WB_GENE_ID=K11G9.5 /WP=CE07378 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204h7 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 77      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 82      6grp_total > 77      4grp_total > 16      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 401
1 2 3 4 range
A 115.2
(-3)
P 		169.4
(-2)
P 		290.7
(0.2)
P 		441.5
(3)
P 		326
B 95.9
(-3)
P 		185.1
(-1.7)
P 		243.1
(-0.8)
P 		496.8
(3)
P 		401
C 95.8
(-3)
P 		219.3
(-0.8)
P 		292.2
(0.4)
P 		439
(3)
P 		343
avr 102.3
(-3) 		191.3
(-1.5) 		275.3
(-0.1) 		459.1
(3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 288.4
(-3)
P 		287.2
(-3)
P 		343.7
(-1.7)
P 		358.2
(-1.4)
P 		321.4
(-2.2)
P 		553
(3)
P 		266
B 247.4
(-2.9)
P 		264.4
(-2.6)
P 		245.1
(-3)
P 		403.5
(0.7)
P 		335.6
(-0.9)
P 		505.1
(3)
P 		260
C 419.1
(0.9)
P 		257
(-3)
P 		378.7
(-0.1)
P 		288.7
(-2.2)
P 		383.7
(0.1)
P 		505
(3)
P 		248
avr 318.3
(-1.8) 		269.5
(-3) 		322.5
(-1.7) 		350.1
(-1.1) 		346.9
(-1.2) 		521
(3) 		252
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 41.9
(-2.2)
P 		36.8
(-3)
P 		76
(3)
P 		64.6
(1.3)
P 		39
B 30.6
(-3)
P 		45.7
(-1.8)
P 		56.3
(-1)
P 		105.9
(3)
P 		75
C 31.7
(-3)
P 		63
(-0.3)
P 		101.9
(3)
P 		74
(0.6)
P 		70
avr 34.7
(-3) 		48.5
(-1.2) 		78.1
(2.6) 		81.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 53.2
(-3)
P 		102.1
(0.6)
P 		74.9
(-1.4)
P 		90.8
(-0.2)
P 		97
(0.2)
P 		134.6
(3)
P 		81
B 86.1
(-1.8)
P 		88
(-1.7)
P 		59.5
(-3)
P 		106.9
(-0.8)
P 		136.3
(0.6)
P 		188.3
(3)
P 		129
C 155.4
(2.3)
P 		78.4
(-1.9)
P 		96.4
(-0.9)
P 		58.1
(-3)
P 		124.1
(0.6)
P 		169.1
(3)
P 		111
avr 98.2
(-1.5) 		89.5
(-2.1) 		76.9
(-3) 		85.3
(-2.4) 		119.1
(-0.1) 		164
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173495_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25148
Sequence Type Exemplar sequence
Representative Public ID C66155 NCBI
Target Description C66155 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=K11G9.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66155 /WB_GENE_ID=K11G9.5 /WP=CE07378 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204h7 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072294(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072294 NCBI Caenorhabditis elegans K11G9.5 (K11G9.5) mRNA, complete cds. 11/11 None
K11G9.5 ENSEMBL cdna:known chromosome:CEL140:V:6688412:6691079:-1 gene:K11G9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6688439-6691081(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11G9.5
Entrez Gene 179059 Entrez gene
SwissProt Q23012 EMBL-EBI
WormBase CE30094 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04978 Hypothetical protein K11G9.5 [Caenorhabditis elegans] ref|NP_504695.2| K11G9.5 [Caenorhabditis elegans] 0.0
blast CAE71931 Hypothetical protein CBG18995 [Caenorhabditis briggsae] 0.0
blast AAD56301 Hypothetical protein T22F3.11a [Caenorhabditis elegans] ref|NP_504015.1| T22F3.11a [Caenorhabditis elegans] 1.0E-133
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504695.2 12 13-35,67-89,96-118,128-147,154-176,186-205,247-269,284-306,318-340,344-366,379-401,411-433
K11G9.5 12 13-35,67-89,96-118,128-147,154-176,186-205,247-269,284-306,318-340,344-366,379-401,411-433
Sequence
Target Sequence 
>C. ELEGANS:173495_AT
gaggagccttgatgatttttgccagaaatgttacgctcaatttcattttgttttacttct
attgatcgcaagttgtcccatttctacatttattctttaatctgtcatctcattgttgtc
ctatttcagagtcaattttcagactcaaaccatcctgaatttcacttaattcccaactga
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGAGCCTTGATGATTTTTGCCAG 197 405 1442 Antisense
TTTTTGCCAGAAATGTTACGCTCAA 445 675 1457 Antisense
GTTACGCTCAATTTCATTTTGTTTT 703 445 1471 Antisense
TTGTTTTACTTCTATTGATCGCAAG 644 705 1489 Antisense
TGATCGCAAGTTGTCCCATTTCTAC 420 565 1504 Antisense
GTCCCATTTCTACATTTATTCTTTA 622 475 1516 Antisense
TTTATTCTTTAATCTGTCATCTCAT 325 675 1530 Antisense
GTCATCTCATTGTTGTCCTATTTCA 507 467 1545 Antisense
GTCAATTTTCAGACTCAAACCATCC 614 463 1572 Antisense
GACTCAAACCATCCTGAATTTCACT 4 375 1583 Antisense
AATTTCACTTAATTCCCAACTGATT 146 175 1599 Antisense
Sequence Source Affymetrix Proprietary Database