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[173492_s_at]

Description C66133 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D1044.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66133 /WB_GENE_ID=D1044.3 /WP=CE27894 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204f6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 50      4grp_high_8_8 > 33      6grp_highest_nonorm > 71      6grp_total > 32      4grp_total > 46      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 419
1 2 3 4 range
A 576.6
(3)
P 		304.3
(-1.6)
P 		247.3
(-2.5)
P 		218.1
(-3)
P 		359
B 613
(3)
P 		295.3
(-2)
P 		268.2
(-2.4)
P 		228
(-3)
P 		385
C 637.4
(3)
P 		406
(-0.5)
P 		263.6
(-2.6)
P 		237.5
(-3)
P 		400
avr 609
(3) 		335.2
(-1.3) 		259.7
(-2.5) 		227.9
(-3) 		381

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 383
1 2 3 4 5 6 range
A 435.8
(2)
P 		373.5
(1)
P 		501.6
(3)
P 		365.1
(0.9)
P 		217
(-1.5)
P 		118.9
(-3)
P 		383
B 411.7
(1.8)
P 		391.3
(1.5)
P 		474.4
(3)
P 		283.1
(-0.5)
P 		258.5
(-1)
P 		150.8
(-3)
P 		324
C 332.3
(1.5)
P 		371.2
(2.5)
P 		378.7
(2.7)
P 		392.7
(3)
P 		221.8
(-1.2)
P 		150.1
(-3)
P 		243
avr 393.3
(1.9) 		378.7
(1.6) 		451.6
(3) 		347
(1) 		232.4
(-1.2) 		139.9
(-3) 		312
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 210
(3)
P 		66
(-1.9)
P 		64.6
(-1.9)
P 		31.9
(-3)
P 		178
B 195.5
(3)
P 		72.9
(-2)
P 		62.1
(-2.4)
P 		48.6
(-3)
P 		147
C 211
(3)
P 		116.7
(-0.3)
P 		91.9
(-1.2)
P 		40
(-3)
P 		171
avr 205.5
(3) 		85.2
(-1.4) 		72.9
(-1.8) 		40.2
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 80.3
(-0)
P 		132.8
(3)
P 		109.2
(1.6)
P 		92.6
(0.7)
P 		65.5
(-0.9)
P 		28.9
(-3)
P 		104
B 143.2
(3)
P 		130.3
(2.1)
P 		115.2
(1.1)
P 		75
(-1.7)
P 		105
(0.4)
P 		56.2
(-3)
P 		87
C 123.2
(3)
P 		113.3
(2.2)
P 		96.4
(0.8)
P 		79
(-0.6)
P 		71.8
(-1.2)
P 		50.3
(-3)
P 		73
avr 115.6
(2.3) 		125.5
(3) 		106.9
(1.6) 		82.2
(-0.2) 		80.8
(-0.3) 		45.1
(-3) 		80
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173492_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.24387
Sequence Type Exemplar sequence
Representative Public ID C66133 NCBI
Target Description C66133 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=D1044.3 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C66133 /WB_GENE_ID=D1044.3 /WP=CE27894 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk204f6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065776(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065776 NCBI Caenorhabditis elegans D1044.7 (D1044.7) mRNA, complete cds. 11/11 None
SNAP00000008688 ENSEMBL cdna:SNAP chromosome:CEL140:III:5507006:5508686:-1 11/11 None
GENEFINDER00000008693 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5507006:5512758:-1 11/11 None
D1044.7 ENSEMBL cdna:known chromosome:CEL140:III:5507006:5508694:-1 gene:D1044.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171123 1/11 Cross Hyb Matching Probes A 
SNAP00000008689 1/11 Cross Hyb Matching Probes None
D1044.3 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5507005-5517478(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1044.7
Entrez Gene 175758 Entrez gene
SwissProt Q95QP8 EMBL-EBI
WormBase CE27895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68287 Hypothetical protein D1044.7 [Caenorhabditis elegans] ref|NP_498177.1| D1044.7 [Caenorhabditis elegans] 0.0
blast T15881 hypothetical protein D1044.3 - Caenorhabditis elegans 0.0
blast AAL27237 Prion-like-(q/n-rich)-domain-bearing protein protein 25 [Caenorhabditis elegans] ref|NP_741140.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-25) [Caenorhabditis elegans] sp|P41951|PQN25_CAEEL Glutamine/asparagine-rich protein pqn-25 0.0
blast AAL27237 Prion-like-(q/n-rich)-domain-bearing protein protein 25 [Caenorhabditis elegans] ref|NP_741140.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-25) [Caenorhabditis elegans] sp|P41951|PQN25_CAEEL Glutamine/asparagine-rich protein pqn-25 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-20
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.2E-17
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.8E-23
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.5E-19
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.4E-24
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.7E-22
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 8.3E-23
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.5E-13
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 5.0E-24
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.5E-29
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 9.6E-26
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-20
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.2E-17
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.8E-23
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.5E-19
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 1.2E-20
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.2E-17
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 3.8E-23
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 2.5E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000008693 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:173492_S_AT
aactcttgcatcgccaggacaaaattgtcagatttcttctcagtgtattgacaactcggt
gtgcaataatcagatgtgctcgtgcaatgggaactgccgattggtatttggatactgtgt
cccatttactaactcaaaatgccaacaaactcaaactcttgtcaataaccaatgtgttct
cctgtcaattgtcggagagacatgcatcgcgaatcaacaatgcgttggaggagccatgtg
taactctggaacctgcaggtgcacaaatggagcaactgcaatgtacggatactgtatcag
ttcccagtcaactgtcaatccttgcaattcgaatcaggtctactacaacggtcagtgtta
taacactgttaatattgggttccaatgccagatcacacaacagtgccttggaaactctca
atgtcagaactcattctgtcagtgcacatcgggatcccccaataatggtatctgcccaac
ttctccaaacacctcaaatctgtgctcttctggtcaaactgttcaactagacaataataa
tcagccaatcaattgtttggttactgtatgccccaacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTTGCATCGCCAGGACAAAAT 612 139 5071 Antisense
GATACTGTGTCCCATTTACTAACTC 441 423 5181 Antisense
ATAACCAATGTGTTCTCCTGTCAAT 497 25 5235 Antisense
GTCAACTGTCAATCCTTGCAATTCG 210 465 5377 Antisense
GAATCAGGTCTACTACAACGGTCAG 495 327 5401 Antisense
GCCAGATCACACAACAGTGCCTTGG 133 279 5457 Antisense
GAACTCATTCTGTCAGTGCACATCG 116 349 5497 Antisense
GCACATCGGGATCCCCCAATAATGG 31 315 5514 Antisense
ATAATGGTATCTGCCCAACTTCTCC 420 25 5532 Antisense
AACACCTCAAATCTGTGCTCTTCTG 462 135 5558 Antisense
GTTTGGTTACTGTATGCCCCAACAC 608 451 5625 Antisense
Sequence Source Affymetrix Proprietary Database