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[173491_s_at]

Description C70588 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58H7.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70588 /WB_GENE_ID=F58H7.2 /WP=CE17931 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk410e6 : 5prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 08      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 60      6grp_total > 19      4grp_total > 01      6grp_highest_sub > De      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 690
1 2 3 4 range
A 708.3
(-2.6)
P 		676.9
(-3)
P 		755.6
(-2.1)
P 		1213.9
(3)
P 		537
B 703.3
(-2.7)
P 		674.8
(-3)
P 		718.9
(-2.6)
P 		1311.1
(3)
P 		636
C 698
(-2)
P 		621.6
(-3)
P 		741.2
(-1.4)
P 		1068.1
(3)
P 		447
avr 703.2
(-2.5) 		657.8
(-3) 		738.6
(-2.1) 		1197.7
(3) 		540

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 285
1 2 3 4 5 6 range
A 543.6
(3)
P 		381.6
(-1.5)
P 		390
(-1.2)
P 		334.8
(-2.8)
P 		372.2
(-1.7)
P 		325.8
(-3)
P 		218
B 536
(3)
P 		334.2
(-3)
P 		341
(-2.8)
P 		448
(0.4)
P 		437.4
(0.1)
P 		339.5
(-2.8)
P 		202
C 495.1
(3)
P 		314.2
(-1.6)
P 		439.7
(1.6)
P 		343.9
(-0.8)
P 		449.2
(1.8)
P 		258.5
(-3)
P 		237
avr 524.9
(3) 		343.3
(-2) 		390.2
(-0.7) 		375.6
(-1.1) 		419.6
(0.1) 		307.9
(-3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 257.9
(3)
P 		146.9
(-3)
P 		197.5
(-0.3)
P 		177.7
(-1.3)
P 		111
B 224.3
(0.1)
P 		166.7
(-3)
P 		166.6
(-3)
P 		279.4
(3)
P 		113
C 231
(0.9)
P 		178.7
(-3)
P 		258.3
(3)
P 		180.1
(-2.9)
P 		80
avr 237.7
(3) 		164.1
(-3) 		207.5
(0.5) 		212.4
(0.9) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 100.2
(-0.8)
P 		135.7
(3)
P 		84.9
(-2.4)
P 		84.9
(-2.4)
P 		112.3
(0.5)
P 		79.3
(-3)
P 		56
B 186.5
(3)
P 		111.2
(-1.4)
P 		82.8
(-3)
P 		118.7
(-0.9)
P 		177.7
(2.5)
P 		126.6
(-0.5)
P 		104
C 183.5
(3)
P 		95.9
(-1.6)
P 		111.9
(-0.8)
P 		69.2
(-3)
P 		145.3
(1)
P 		86.5
(-2.1)
P 		114
avr 156.7
(3) 		114.3
(-0.9) 		93.2
(-2.8) 		90.9
(-3) 		145.1
(1.9) 		97.5
(-2.4) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 173491_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25043
Sequence Type Exemplar sequence
Representative Public ID C70588 NCBI
Target Description C70588 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F58H7.2 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C70588 /WB_GENE_ID=F58H7.2 /WP=CE17931 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk410e6 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067616(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067616 NCBI Caenorhabditis elegans F58H7.2 (F58H7.2) mRNA, complete cds. 11/11 None
SNAP00000022283 ENSEMBL cdna:SNAP chromosome:CEL140:IV:922404:944062:-1 11/11 None
F58H7.2 ENSEMBL cdna:known chromosome:CEL140:IV:940075:945603:-1 gene:F58H7.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000022287 7/11 Cross Hyb Matching Probes None
GENEFINDER00000022290 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:940081-945610(-) 97.37 100.0
Public Domain and Genome References
Gene Title
Ensembl F58H7.2
Entrez Gene 176916 Entrez gene
SwissProt O45089 EMBL-EBI
WormBase CE34896 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589110_AT similar to Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide amidohydrolase) cfa
CANINE_2:CFA.13572.1.A1_AT similar to Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide amidohydrolase) cfa
CANINE_2:CFAAFFX.7289.1.S1_AT similar to Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide amidohydrolase) cfa
CANINE_2:CFAAFFX.7289.1.S1_S_AT similar to Fatty-acid amide hydrolase (Oleamide hydrolase) (Anandamide amidohydrolase) cfa
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4040 amidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02593 Hypothetical protein F58H7.2 [Caenorhabditis elegans] ref|NP_500017.2| F58H7.2 [Caenorhabditis elegans] 0.0
blast CAE56260 Hypothetical protein CBG23903 [Caenorhabditis briggsae] 0.0
blast CAE68291 Hypothetical protein CBG13976 [Caenorhabditis briggsae] 0.0
blast AAB00667 Hypothetical protein B0218.1a [Caenorhabditis elegans] ref|NP_501368.1| B0218.1a [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 1.0E-126
Pfam IPR000120 EMBL-EBI Amidase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:173491_S_AT
tccgcaaccggaccatatgtacagtattttttgcgccggggctacggccgatggagggct
ctatttgatggatagcttggccaaggatattatcccaccagaagcagatattggatttcc
agtagctaagctcccacatttcattcaaagacttctgagaaaatactggcaccatcgtag
ggaacgccaaattattcaggaattgccacatgacacagaagaaatgcgtcaaatgcacga
aaaaatcgaggactaccgtcacgaattcgtactggcgatgcgtgccaagaagcttgacgc
cctggtgtgcccagcattcggatgcccacccccgcatcacggaatgcccaacaaaatcct
cggagccaacagttacccggctctctacaatctgatagactttgcagctggcactgtgcc
agttaccgtgcaaaaacaggaggatgaagtggaacttcgaaaaatgaagactgaagattc
gtgggatcgtagggtggtgactgaatccaaaaattgtattggactgccggtttctgttca
aattgccactcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGCAACCGGACCATATGTACAGT 3 593 1246 Antisense
GCTACGGCCGATGGAGGGCTCTATT 45 303 1286 Antisense
CAGTAGCTAAGCTCCCACATTTCAT 532 201 1365 Antisense
ATACTGGCACCATCGTAGGGAACGC 677 21 1408 Antisense
GAGGACTACCGTCACGAATTCGTAC 110 403 1493 Antisense
GAATGCCCAACAAAATCCTCGGAGC 108 331 1587 Antisense
ATCCTCGGAGCCAACAGTTACCCGG 639 37 1601 Antisense
GATAGACTTTGCAGCTGGCACTGTG 335 421 1639 Antisense
TGGCACTGTGCCAGTTACCGTGCAA 127 547 1654 Antisense
ATTGTATTGGACTGCCGGTTTCTGT 205 5 1758 Antisense
CGGTTTCTGTTCAAATTGCCACTCC 518 243 1773 Antisense
Sequence Source Affymetrix Proprietary Database