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[173489_at]

Description C50059 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F14B6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50059 /WB_GENE_ID=F14B6.1 /WP=CE17663 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk477b2 : 5prime end, single read.
Cluster 6grp_total > 88      4grp_total > 04      6grp_cgc > 59      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 11.8
(-1.6)
A 		12
(-1.6)
A 		1.5
(-3)
A 		45.7
(3)
A 		44
B 17.1
(1.3)
A 		8.5
(-1.4)
A 		3.5
(-3)
A 		22.3
(3)
A 		19
C 13.9
(-1.6)
A 		0.6
(-3)
A 		3
(-2.7)
A 		58
(3)
P 		57
avr 14.3
(-1.2) 		7
(-2.3) 		2.7
(-3) 		42
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.6
(-3)
A 		16.3
(-1.2)
A 		7.4
(-2.3)
A 		36.1
(1.1)
P 		52.2
(3)
P 		51
B 2.8
(-2.6)
A 		4.3
(-2.3)
A 		1.3
(-2.8)
A 		0.2
(-3)
A 		15.7
(-0.4)
A 		36.2
(3)
P 		36
C 0.6
(-3)
A 		3.7
(-2.6)
A 		1.6
(-2.9)
A 		10.8
(-1.7)
A 		21.2
(-0.3)
A 		46.7
(3)
P 		46
avr 1.5
(-3) 		3.2
(-2.8) 		6.4
(-2.3) 		6.1
(-2.4) 		24.3
(0.1) 		45
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 4.3
(0.7)
A 		2.6
(-0.9)
A 		0.4
(-3)
A 		6.7
(3)
A 		6
B 5.5
(3)
A 		2.1
(-1.3)
A 		0.8
(-3)
A 		4.7
(2)
A 		5
C 4.6
(-0.3)
A 		0.2
(-3)
A 		1
(-2.5)
A 		9.8
(3)
P 		10
avr 4.8
(0.8) 		1.6
(-2.2) 		0.7
(-3) 		7.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 0.2
(-3)
A 		0.6
(-2.8)
A 		3.6
(-1.4)
A 		1.9
(-2.2)
A 		10.9
(2.1)
P 		12.7
(3)
P 		13
B 1
(-2.6)
A 		1.4
(-2.4)
A 		0.3
(-2.9)
A 		0.1
(-3)
A 		6.4
(-0.2)
A 		13.5
(3)
P 		13
C 0.2
(-3)
A 		1.1
(-2.6)
A 		0.4
(-2.9)
A 		2.2
(-2.2)
A 		6.9
(-0.4)
A 		15.6
(3)
P 		15
avr 0.5
(-3) 		1
(-2.8) 		1.4
(-2.6) 		1.4
(-2.6) 		8.1
(0.4) 		13.9
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173489_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22612
Sequence Type Exemplar sequence
Representative Public ID C50059 NCBI
Target Description C50059 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=F14B6.1 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C50059 /WB_GENE_ID=F14B6.1 /WP=CE17663 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk477b2 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060683 NCBI Caenorhabditis elegans F14B6.1 (F14B6.1) mRNA, complete cds. 11/11 None
F14B6.1 ENSEMBL cdna:known chromosome:CEL140:I:12224371:12225873:-1 gene:F14B6.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12224312-12225780(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sdz-14
Ensembl F14B6.1
Entrez Gene 173101 Entrez gene
SwissProt O62161 EMBL-EBI
WormBase CE17663 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04105 Hypothetical protein F14B6.1 [Caenorhabditis elegans] ref|NP_493084.1| F14B6.1 [Caenorhabditis elegans] 1.0E-125
blast CAB04104 Hypothetical protein F14B6.3 [Caenorhabditis elegans] ref|NP_493086.1| F14B6.3 [Caenorhabditis elegans] 2.0E-11
Sequence
Target Sequence 
>C. ELEGANS:173489_AT
gtgacttcgagtgagcagatatgttactttgcagatgataatcggctttttcgtaatctt
cactatttttttcgcctttgttttagtttccatcttttattaattaattgcttttaaaaa
aaaccaaaacattcagaaatgtagaattttttccactttccaagagattctaatgttcaa
aagttgcacatatatatacaaaattttattgctctcagatgctgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGACTTCGAGTGAGCAGATATGTT 128 483 729 Antisense
GTGAGCAGATATGTTACTTTGCAGA 397 481 739 Antisense
GTTACTTTGCAGATGATAATCGGCT 119 447 751 Antisense
AATCGGCTTTTTCGTAATCTTCACT 648 169 768 Antisense
GCTTTTTCGTAATCTTCACTATTTT 331 305 773 Antisense
TTCGCCTTTGTTTTAGTTTCCATCT 594 697 799 Antisense
GTTTCCATCTTTTATTAATTAATTG 496 451 814 Antisense
CAGAAATGTAGAATTTTTTCCACTT 311 205 862 Antisense
TTTTCCACTTTCCAAGAGATTCTAA 341 677 877 Antisense
GAGATTCTAATGTTCAAAAGTTGCA 533 395 892 Antisense
ATTTTATTGCTCTCAGATGCTGTGC 376 15 931 Antisense
Sequence Source Affymetrix Proprietary Database