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[173488_at]

Description C41590 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05E7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C41590 /WB_GENE_ID=T05E7.5 /WP=CE13239 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk274f5 : 5prime end, single read.
Cluster 6grp_total > 77      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 4.9
(-3)
A 		8.5
(-2.2)
A 		24.2
(1.4)
P 		31.3
(3)
A 		26
B 1.4
(-2.9)
A 		2.3
(-2.6)
A 		20.7
(3)
A 		1.1
(-3)
A 		20
C 5.1
(-3)
A 		11.4
(-0.1)
A 		8
(-1.7)
A 		18.3
(3)
A 		13
avr 3.8
(-3) 		7.4
(-1.4) 		17.6
(3) 		16.9
(2.7) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 2.3
(-3)
A 		14.9
(-2.4)
M 		14.6
(-2.4)
A 		2.4
(-3)
A 		26.1
(-1.8)
A 		125.3
(3)
P 		123
B 17.3
(-2.2)
A 		3.3
(-3)
A 		10.8
(-2.6)
A 		21.3
(-2)
P 		50.1
(-0.4)
P 		110.9
(3)
P 		108
C 12.4
(-2.8)
A 		15.2
(-2.6)
A 		8.5
(-3)
A 		19.8
(-2.3)
A 		34.9
(-1.4)
P 		110.2
(3)
P 		102
avr 10.7
(-3) 		11.1
(-3) 		11.3
(-3) 		14.5
(-2.8) 		37
(-1.5) 		115.5
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.8
(-3)
A 		1.8
(-3)
A 		6.3
(3)
P 		4.6
(0.7)
A 		5
B 0.4
(-2.7)
A 		0.6
(-2.5)
A 		4.8
(3)
A 		0.2
(-3)
A 		5
C 1.7
(-3)
A 		3.3
(3)
A 		2.8
(1.1)
A 		3.1
(2.3)
A 		2
avr 1.3
(-3) 		1.9
(-1.9) 		4.6
(3) 		2.6
(-0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 0.4
(-3)
A 		5.3
(-2)
M 		3.2
(-2.4)
A 		0.6
(-3)
A 		7.9
(-1.5)
A 		30.5
(3)
P 		30
B 6
(-2.3)
A 		1.1
(-3)
A 		2.6
(-2.8)
A 		5.6
(-2.3)
P 		20.4
(-0.1)
P 		41.3
(3)
P 		40
C 4.6
(-2.6)
A 		4.6
(-2.6)
A 		2.2
(-3)
A 		4
(-2.7)
A 		11.3
(-1.4)
P 		36.9
(3)
P 		35
avr 3.7
(-2.8) 		3.7
(-2.8) 		2.7
(-3) 		3.4
(-2.9) 		13.2
(-1.1) 		36.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 173488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.23005
Sequence Type Exemplar sequence
Representative Public ID C41590 NCBI
Target Description C41590 /REP_DB=TREMBL Accession /5_PRIME_EXT_ID=T05E7.5 /5_PRIME_EXT_DB=WormBase Gene ID /GB=C41590 /WB_GENE_ID=T05E7.5 /WP=CE13239 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk274f5 : 5prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059386 NCBI Caenorhabditis elegans T05E7.5 (T05E7.5) mRNA, complete cds. 11/11 None
T05E7.5 ENSEMBL cdna:known chromosome:CEL140:I:6209002:6210481:-1 gene:T05E7.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6208941-6210411(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E7.5
Entrez Gene 172308 Entrez gene
SwissProt O01861 EMBL-EBI
WormBase CE13239 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54217 Hypothetical protein T05E7.5 [Caenorhabditis elegans] ref|NP_491787.1| T05E7.5 [Caenorhabditis elegans] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 6.0E-15
blast XP_649259 hypothetical protein 326.t00008 [Entamoeba histolytica HM-1:IMSS] gb|EAL43878.1| hypothetical protein 326.t00008 [Entamoeba histolytica HM-1:IMSS] 3.0E-13
Sequence
Target Sequence 
>C. ELEGANS:173488_AT
ttatcaataatttaatatcacccaattactttttccgtgttaatttttcttcttttagct
actatcgcttttttagcattttttcgatttgatactattgcttttactttaccatttcca
ttgcact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCAATAATTTAATATCACCCAA 90 679 1150 Antisense
TATCACCCAATTACTTTTTCCGTGT 556 659 1165 Antisense
ATTTTTCTTCTTTTAGCTACTATCG 116 15 1192 Antisense
TCTTCTTTTAGCTACTATCGCTTTT 352 617 1197 Antisense
AGCTACTATCGCTTTTTTAGCATTT 435 79 1206 Antisense
GCTTTTTTAGCATTTTTTCGATTTG 390 303 1216 Antisense
GCATTTTTTCGATTTGATACTATTG 149 309 1225 Antisense
GATACTATTGCTTTTACTTTACCAT 22 423 1240 Antisense
ATTGCTTTTACTTTACCATTTCCAT 470 3 1246 Antisense
GCTTTTACTTTACCATTTCCATTGC 224 303 1249 Antisense
TTTACTTTACCATTTCCATTGCACT 368 673 1252 Antisense
Sequence Source Affymetrix Proprietary Database